Publications by authors named "Hidayat Trimarsanto"

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Rapid detection of G6PD deficiency SNPs using a novel amplicon-based minion sequencing assay.
Costanza Tacoli, Mariana Kleinecke, Kian Soon Hoon, Hidayat Trimarsanto, Muhammad Nadeem

Sci Rep· December 2025

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Microhaplotype deep sequencing assays to capture Plasmodium vivax infection lineages.
Mariana Kleinecke, Edwin Sutanto, Angela Rumaseb, Kian Soon Hoon, Hidayat Trimarsanto

Nat Commun· August 2025

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Rapid detection of G6PD deficiency SNPs using a novel amplicon-based MinION Sequencing Assay.
Costanza Tacoli, Mariana Kleinecke, Kian Soon Hoon, Hidayat Trimarsanto, Muhammad Nadeem

bioRxiv· June 2025

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Characterizing the genetic diversity and population structure of Plasmodium knowlesi in Aceh Province, Indonesia.
Pinkan P Kariodimedjo, Nadia Fadila, Sydney R Fine, Hidayat Trimarsanto, Chris Cotter

PLoS One· May 2025

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Genomic epidemiology of Plasmodium knowlesi reveals putative genetic drivers of adaptation in Malaysia.
Jacob A F Westaway, Ernest Diez Benavente, Sarah Auburn, Michal Kucharski, Nicolas Aranciaga, Hidayat Trimarsanto

PLoS Negl Trop Dis· March 2025

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A description of lineage 1 Mycobacterium tuberculosis from papua, Indonesia.
Hanif A K Djunaedy, Clarissa A Febinia, Raph L Hamers, Kevin Baird, Iqbal Elyazar, Hidayat Trimarsanto

Tuberculosis (Edinb)· December 2024

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Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites.
Sasha V Siegel, Hidayat Trimarsanto, Roberto Amato, Kathryn Murie, Aimee R Taylor

Nat Commun· August 2024

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Whole-Genome Sequencing and Mutation Analyses of SARS-CoV-2 Isolates from Indonesia.
Sukma Oktavianthi, Aksar Chair Lages, Rinaldy Kusuma, Tri Shinta Kurniasih, Hidayat Trimarsanto

Pathogens· March 2024

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Genomics of Plasmodium vivax in Colombia reveals evidence of local bottle-necking and inter-country connectivity in the Americas.
Edwin Sutanto, Zuleima Pava, Diego F Echeverry, Tatiana M Lopera-Mesa, Lidia Madeline Montenegro, Hidayat Trimarsanto

Sci Rep· November 2023

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Genomic analysis of Plasmodium vivax describes patterns of connectivity and putative drivers of adaptation in Ethiopia.
Alebachew Messele Kebede, Edwin Sutanto, Hidayat Trimarsanto, Ernest Diez Benavente, Mariana Barnes

Sci Rep· November 2023

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Genomic profiles of Indonesian colorectal cancer patients.
Murdani Abdullah, Sofy Meilany, Hidayat Trimarsanto, Safarina G Malik, Ninik Sukartini

F1000Res· May 2023

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Lineage-informative microhaplotypes for spatio-temporal surveillance of malaria parasites.
Sasha V Siegel, Roberto Amato, Hidayat Trimarsanto, Edwin Sutanto, Mariana Kleinecke

medRxiv· March 2023

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A molecular barcode and web-based data analysis tool to identify imported Plasmodium vivax malaria.
Hidayat Trimarsanto, Roberto Amato, Richard D Pearson, Edwin Sutanto, Rintis Noviyanti

Commun Biol· December 2022

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Novel highly-multiplexed AmpliSeq targeted assay for genetic surveillance use cases at multiple geographical scales.
Johanna Helena Kattenberg, Hong Van Nguyen, Hieu Luong Nguyen, Erin Sauve, Ngoc Thi Hong Nguyen, Hidayat Trimarsanto

Front Cell Infect Microbiol· August 2022

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An open dataset of genome variation in 1,895 worldwide samples.

Wellcome Open Res· April 2022

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Genetic diversity and neutral selection in Plasmodium vivax erythrocyte binding protein correlates with patient antigenicity.
Jin-Hee Han, Jee-Sun Cho, Jessica J Y Ong, Ji-Hoon Park, Myat Htut Nyunt, Hidayat Trimarsanto

PLoS Negl Trop Dis· July 2020

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Implementing parasite genotyping into national surveillance frameworks: feedback from control programmes and researchers in the Asia-Pacific region.
Rintis Noviyanti, Olivo Miotto, Alyssa Barry, Jutta Marfurt, Sasha Siegel, Hidayat Trimarsanto

Malar J· July 2020

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Molecular surveillance over 14 years confirms reduction of Plasmodium vivax and falciparum transmission after implementation of Artemisinin-based combination therapy in Papua, Indonesia.
Zuleima Pava, Agatha M Puspitasari, Angela Rumaseb, Irene Handayuni, Leily Trianty, Hidayat Trimarsanto

PLoS Negl Trop Dis· May 2020

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Genomic Analysis of Plasmodium vivax in Southern Ethiopia Reveals Selective Pressures in Multiple Parasite Mechanisms.
Sarah Auburn, Sisay Getachew, Richard D Pearson, Roberto Amato, Olivo Miotto, Hidayat Trimarsanto

J Infect Dis· October 2019

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Clinical features and virological confirmation of perinatal dengue infection in Jambi, Indonesia: A case report.
Sotianingsih Haryanto, Benediktus Yohan, Marsha Sinditia Santoso, Rahma F Hayati, Dionisius Denis, Hidayat Trimarsanto

Int J Infect Dis· September 2019

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Placental mitochondrial DNA copy number is associated with reduced birth weight in women with placental malaria.
Sukma Oktavianthi, Muhammad Fauzi, Leily Trianty, Hidayat Trimarsanto, Anom Bowolaksono

Placenta· May 2019

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Evolutionary study and phylodynamic pattern of human influenza A/H3N2 virus in Indonesia from 2008 to 2010.
Agustiningsih Agustiningsih, Hidayat Trimarsanto, Restuadi Restuadi, I Made Artika, Margaret Hellard

PLoS One· January 2019

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Transcription factor 7-like 2 single nucleotide polymorphisms are associated with lipid profile in the Balinese.
Sukma Oktavianthi, Made R Saraswati, Ketut Suastika, Pande Dwipayana, Asri Sulfianti, Hidayat Trimarsanto

Mol Biol Rep· October 2018

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Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics.
Sarah Auburn, Ernest D Benavente, Olivo Miotto, Richard D Pearson, Roberto Amato, Hidayat Trimarsanto

Nat Commun· July 2018

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Genomic analysis of dengue virus serotype 1 (DENV-1) genotypes from Surabaya, Indonesia.
Benediktus Yohan, Puspa Wardhani, Hidayat Trimarsanto, A Aryati, R Tedjo Sasmono

Virus Genes· June 2018

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