Publications by authors named "Alan Lowe"

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PERC: a suite of software tools for the curation of cryoEM data with application to simulation, modeling and machine learning.
Beatriz Costa-Gomes, Joel Greer, Nikolai Juraschko, James Parkhurst, Jola Mirecka, Alan Lowe

Acta Crystallogr F Struct Biol Commun· October 2025

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Spatial and temporal signatures of cell competition revealed by K-function analysis.
Nathan J Day, Jasmine Michalowska, Manasi Kelkar, Giulia Vallardi, Guillaume Charras, Alan R Lowe

Mol Biol Cell· May 2025

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AI: A transformative opportunity in cell biology.
Ambrose Carr, Jonah Cool, Theofanis Karaletsos, Donghui Li, Alan R Lowe

Mol Biol Cell· December 2024

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cellPLATO - an unsupervised method for identifying cell behaviour in heterogeneous cell trajectory data.
Michael J Shannon, Shira E Eisman, Alan R Lowe, Tyler F W Sloan, Emily M Mace

J Cell Sci· October 2024

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Self-sustaining long-term 3D epithelioid cultures reveal drivers of clonal expansion in esophageal epithelium.
Albert Herms, David Fernandez-Antoran, Maria P Alcolea, Argyro Kalogeropoulou, Ujjwal Banerjee, Alan R Lowe

Nat Genet· October 2024

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A randomized, double-blind, placebo-controlled, crossover study of respiratory safety of lemborexant in moderate to severe obstructive sleep apnea.
Jocelyn Y Cheng, Daniel Lorch, Alan D Lowe, Naohisa Uchimura, Nancy Hall

J Clin Sleep Med· January 2024

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cellPLATO: an unsupervised method for identifying cell behaviour in heterogeneous cell trajectory data.
Michael J Shannon, Shira E Eisman, Alan R Lowe, Tyler Sloan, Emily M Mace

bioRxiv· November 2023

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Machine learning enhanced cell tracking.
Christopher J Soelistyo, Kristina Ulicna, Alan R Lowe

Front Bioinform· July 2023

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Convolutional Neural Networks for Classifying Chromatin Morphology in Live-Cell Imaging.
Kristina Ulicna, Laure T L Ho, Christopher J Soelistyo, Nathan J Day, Alan R Lowe

Methods Mol Biol· June 2022

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Cell-scale biophysical determinants of cell competition in epithelia.
Daniel Gradeci, Anna Bove, Giulia Vallardi, Alan R Lowe, Shiladitya Banerjee

Elife· May 2021

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Changes in headache characteristics with oral appliance treatment for obstructive sleep apnea.
Ji Woon Park, Sujay Mehta, Sandra Fastlicht, Alan A Lowe, Fernanda R Almeida

Sci Rep· January 2021

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Single-cell approaches to cell competition: High-throughput imaging, machine learning and simulations.
Daniel Gradeci, Anna Bove, Guillaume Charras, Alan R Lowe, Shiladitya Banerjee

Semin Cancer Biol· June 2020

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Editorial Overview: Biophysical and computational methods.
Alan R Lowe, Laura S Itzhaki

Curr Opin Struct Biol· October 2019

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Miro clusters regulate ER-mitochondria contact sites and link cristae organization to the mitochondrial transport machinery.
Souvik Modi, Guillermo López-Doménech, Elise F Halff, Christian Covill-Cooke, Davor Ivankovic, Alan R Lowe

Nat Commun· September 2019

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Context-Dependent Energetics of Loop Extensions in a Family of Tandem-Repeat Proteins.
Albert Perez-Riba, Alan R Lowe, Ewan R G Main, Laura S Itzhaki

Biophys J· June 2018

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A Liquid to Solid Phase Transition Underlying Pathological Huntingtin Exon1 Aggregation.
Thomas R Peskett, Frédérique Rau, Jonathan O'Driscoll, Rickie Patani, Alan R Lowe

Mol Cell· May 2018

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PyFolding: Open-Source Graphing, Simulation, and Analysis of the Biophysical Properties of Proteins.
Alan R Lowe, Albert Perez-Riba, Laura S Itzhaki, Ewan R G Main

Biophys J· February 2018

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Single-Molecule Imaging to Characterize the Transport Mechanism of the Nuclear Pore Complex.
Grace Jeremy, James Stevens, Alan R Lowe

Methods Mol Biol· December 2017

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Local cellular neighborhood controls proliferation in cell competition.
Anna Bove, Daniel Gradeci, Yasuyuki Fujita, Shiladitya Banerjee, Guillaume Charras, Alan R Lowe

Mol Biol Cell· November 2017

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Conformational transition of FGFR kinase activation revealed by site-specific unnatural amino acid reporter and single molecule FRET.
Louis Perdios, Alan R Lowe, Giorgio Saladino, Tom D Bunney, Nethaji Thiyagarajan

Sci Rep· January 2017

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Prediction of oral appliance treatment outcomes in obstructive sleep apnea: A systematic review.
Kentaro Okuno, Benjamin T Pliska, Mona Hamoda, Alan A Lowe, Fernanda R Almeida

Sleep Med Rev· December 2016

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Effect of orthodontic treatment on the upper airway volume in adults.
Benjamin T Pliska, Isaac T Tam, Alan A Lowe, Alisa M Madson, Fernanda R Almeida

Am J Orthod Dentofacial Orthop· December 2016

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Sleep Stage Coordination of Respiration and Swallowing: A Preliminary Study.
Kentaro Okuno, Kanji Nohara, Etsuko Takai, Takayoshi Sakai, John A Fleetham, Alan A Lowe

Dysphagia· August 2016

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Endoscopy evaluation to predict oral appliance outcomes in obstructive sleep apnoea.
Kentaro Okuno, Yasuhiro Sasao, Kanji Nohara, Takayoshi Sakai, Benjamin T Pliska, Alan A Lowe

Eur Respir J· May 2016

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Cyanobacteria use micro-optics to sense light direction.
Nils Schuergers, Tchern Lenn, Ronald Kampmann, Markus V Meissner, Tiago Esteves, Alan R Lowe

Elife· February 2016

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