Publications by authors named "Alan McCarthy"

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Validation of crAssphage microbial source tracking markers and comparison with Bacteroidales markers for detection and quantification of faecal contaminations in surface water.
Shuang Liu, Trillion Surya Lioe, Li Sun, Evelien M Adriaenssens, Alan J McCarthy

Environ Pollut· February 2025

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The rat telemetry assay and venous catheter access buttons for use in cardiovascular safety pharmacology assessments - Surgical methods, refinements and colony maintenance.
Ed Hale, Diane Storer, Nastarsia Smith, Alan McCarthy, Matt Skinner

J Pharmacol Toxicol Methods· June 2024

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Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity.
Evelien M Adriaenssens, Kata Farkas, James E McDonald, David L Jones, Heather E Allison, Alan J McCarthy

Water Res· September 2021

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Impact of Temperature, Nutrients and Heavy Metals on Bacterial Diversity and Ecosystem Functioning Studied by Freshwater Microcosms and High-Throughput DNA Sequencing.
Tianma Yuan, Alan J McCarthy, Yixin Zhang, Raju Sekar

Curr Microbiol· November 2020

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The Site-Specific Recombination System of the Bacteriophage Φ24.
Mohammed Radhi Mohaisen, Alan John McCarthy, Evelien M Adriaenssens, Heather Elizabeth Allison

Front Microbiol· October 2020

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Next-generation sequencing reveals fecal contamination and potentially pathogenic bacteria in a major inflow river of Taihu Lake.
Kiran Kumar Vadde, Qiaoli Feng, Jianjun Wang, Alan J McCarthy, Raju Sekar

Environ Pollut· November 2019

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Urbanization Impacts the Physicochemical Characteristics and Abundance of Fecal Markers and Bacterial Pathogens in Surface Water.
Tianma Yuan, Kiran Kumar Vadde, Jonathan D Tonkin, Jianjun Wang, Jing Lu, Alan J McCarthy

Int J Environ Res Public Health· May 2019

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Quantification of Microbial Source Tracking and Pathogenic Bacterial Markers in Water and Sediments of Tiaoxi River (Taihu Watershed).
Kiran Kumar Vadde, Alan J McCarthy, Rong Rong, Raju Sekar

Front Microbiol· April 2019

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Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses.
Evelien M Adriaenssens, Kata Farkas, Christian Harrison, David L Jones, Heather E Allison, Alan J McCarthy

mSystems· May 2018

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Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity.
Emma Ransom-Jones, Alan J McCarthy, Sam Haldenby, James Doonan, James E McDonald

mSphere· August 2017

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Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules.
James E McDonald, Niels Larsen, Andrea Pennington, John Connolly, Corrin Wallis, Alan J McCarthy

PLoS One· July 2017

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Acute liver effects, disposition and metabolic fate of [C]-fenclozic acid following oral administration to normal and bile-cannulated male C57BL/6J mice.
Kathryn Pickup, Scott Martin, Elizabeth A Partridge, Huw B Jones, Jonathan Wills, Alan McCarthy

Arch Toxicol· July 2017

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Fifty important research questions in microbial ecology.
Rachael E Antwis, Sarah M Griffiths, Xavier A Harrison, Paz Aranega-Bou, Andres Arce, Alan McCarthy

FEMS Microbiol Ecol· May 2017

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Anoxic Biodegradation of Isosaccharinic Acids at Alkaline pH by Natural Microbial Communities.
Simon P Rout, Christopher J Charles, Charalampos Doulgeris, Alan J McCarthy, Dave J Rooks

PLoS One· June 2016

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Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli.
Marta Veses-Garcia, Xuan Liu, Daniel J Rigden, John G Kenny, Alan J McCarthy

Appl Environ Microbiol· December 2015

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Bacterio-plankton transformation of diazepam and 2-amino-5-chlorobenzophenone in river waters.
Alan D Tappin, J Paul Loughnane, Alan J McCarthy, Mark F Fitzsimons

Environ Sci Process Impacts· May 2015

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Pathogenic LRRK2 mutations in nuclear ageing--a new organelle to study in Parkinson's disease.
John McKinley, Alan McCarthy, Timothy Lynch

Mov Disord· September 2013

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Development and application of a method for the purification of free shigatoxigenic bacteriophage from environmental samples.
David J Rooks, Ben Libberton, Martin J Woodward, Heather E Allison, Alan J McCarthy

J Microbiol Methods· November 2012

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Methods for the isolation of cellulose-degrading microorganisms.
James E McDonald, David J Rooks, Alan J McCarthy

Methods Enzymol· September 2012

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Metagenomic approaches to the discovery of cellulases.
David J Rooks, James E McDonald, Alan J McCarthy

Methods Enzymol· September 2012

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Comparative genomics of Shiga toxin encoding bacteriophages.
Darren L Smith, David J Rooks, Paul C M Fogg, Alistair C Darby, Nick R Thomson, Alan J McCarthy

BMC Genomics· July 2012

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Importance of Micromonospora spp. as colonizers of cellulose in freshwater lakes as demonstrated by quantitative reverse transcriptase PCR of 16S rRNA.
Alexandre B de Menezes, James E McDonald, Heather E Allison, Alan J McCarthy

Appl Environ Microbiol· May 2012

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The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters.
James E McDonald, James N I Houghton, David J Rooks, Heather E Allison, Alan J McCarthy

Environ Microbiol· April 2012

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Identification of genes expressed in cultures of E. coli lysogens carrying the Shiga toxin-encoding prophage Φ24B.
Laura M Riley, Marta Veses-Garcia, Jeffrey D Hillman, Martin Handfield, Alan J McCarthy

BMC Microbiol· March 2012

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The Fibrobacteres: an important phylum of cellulose-degrading bacteria.
Emma Ransom-Jones, David L Jones, Alan J McCarthy, James E McDonald

Microb Ecol· February 2012

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