Publications by authors named "Alex Clop"

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Construction of a Multitissue Cell Atlas Reveals Cell-Type-Specific Regulation of Molecular and Complex Phenotypes in Pigs.
Lijuan Chen, Houcheng Li, Jinyan Teng, Zhen Wang, Xiaolu Qu, Alex Clop

Adv Sci (Weinh)· November 2025

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Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs.
Zhiting Xu, Qing Lin, Xiaodian Cai, Zhanming Zhong, Jinyan Teng, Alex Clop

Natl Sci Rev· May 2025

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The Farm Animal Genotype-Tissue Expression (FarmGTEx) Project.
Lingzhao Fang, Jinyan Teng, Qing Lin, Zhonghao Bai, Shuli Liu, Alex Clop

Nat Genet· April 2025

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Genomic, transcriptomic and epigenomic analysis towards the understanding of porcine semen quality traits. Past, current and future trends.
Pedro Sa, Marta Gòdia, Nicole Lewis, Yu Lian, Alex Clop

Anim Reprod Sci· October 2024

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A compendium of genetic regulatory effects across pig tissues.
Jinyan Teng, Yahui Gao, Hongwei Yin, Zhonghao Bai, Shuli Liu, Alex Clop

Nat Genet· January 2024

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Micrococcal nuclease sequencing of porcine sperm suggests enriched co-location between retained histones and genomic regions related to semen quality and early embryo development.
Marta Gòdia, Yu Lian, Marina Naval-Sanchez, Inma Ponte, Joan Enric Rodríguez-Gil, Alex Clop

PeerJ· June 2023

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Exploring the ovine sperm transcriptome by RNAseq techniques. I Effect of seasonal conditions on transcripts abundance.
Irene Ureña, Carmen González, Manuel Ramón, Marta Gòdia, Alex Clop

PLoS One· April 2022

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Assessing the levels of intraspecific admixture and interspecific hybridization in Iberian wild goats ().
Tainã Figueiredo Cardoso, María Gracia Luigi-Sierra, Anna Castelló, Betlem Cabrera, Antonia Noce, Alex Clop

Evol Appl· November 2021

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Characterization of the Impact of Density Gradient Centrifugation on the Profile of the Pig Sperm Transcriptome by RNA-Seq.
Yu Lian, Marta Gòdia, Anna Castello, Joan Enric Rodriguez-Gil, Sam Balasch, Alex Clop

Front Vet Sci· July 2021

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Whole genome sequencing identifies allelic ratio distortion in sperm involving genes related to spermatogenesis in a swine model.
Marta Gòdia, Joaquim Casellas, Aurora Ruiz-Herrera, Joan E Rodríguez-Gil, Anna Castelló, Alex Clop

DNA Res· December 2020

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A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine.
Marta Gòdia, Antonio Reverter, Rayner González-Prendes, Yuliaxis Ramayo-Caldas, Anna Castelló, Alex Clop

Genet Sel Evol· December 2020

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A pilot RNA-seq study in 40 pietrain ejaculates to characterize the porcine sperm microbiome.
Marta Gòdia, Yuliaxis Ramayo-Caldas, Laura M Zingaretti, Laila Darwich, Samantha López, Alex Clop

Theriogenology· November 2020

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Identification of circular RNAs in porcine sperm and evaluation of their relation to sperm motility.
Marta Gòdia, Anna Castelló, Martina Rocco, Betlem Cabrera, Joan Enric Rodríguez-Gil, Alex Clop

Sci Rep· May 2020

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A RNA-Seq Analysis to Describe the Boar Sperm Transcriptome and Its Seasonal Changes.
Marta Gòdia, Molly Estill, Anna Castelló, Sam Balasch, Joan E Rodríguez-Gil, Alex Clop

Front Genet· April 2019

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A technical assessment of the porcine ejaculated spermatozoa for a sperm-specific RNA-seq analysis.
Marta Gòdia, Fabiana Quoos Mayer, Julieta Nafissi, Anna Castelló, Joan Enric Rodríguez-Gil, Alex Clop

Syst Biol Reprod Med· August 2018

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Mitochondrial DNA variation in Ukrainian wild boars.
Joanna Kubejko, Alex Clop, Viktor Balatsky, Konstantin Pochernyaev, Shahin Eghbalsaied

Anim Genet· December 2017

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Low mitochondrial diversity in native Italian pig breeds is consistent with the occurrence of strong population bottlenecks.
Joanna Kubejko, Marcel Amills, Fabio Pilla, Mariasilvia D'Andrea, Alex Clop

Anim Genet· December 2017

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Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes.
Alex Clop, Abdoallah Sharaf, Anna Castelló, Sebastián Ramos-Onsins, Susanna Cirera

BMC Genomics· August 2016

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Identification of genetic variation in the swine toll-like receptors and development of a porcine TLR genotyping array.
Alex Clop, Abe Huisman, Pieter van As, Abdoallah Sharaf, Sophia Derdak

Genet Sel Evol· March 2016

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An in-depth characterization of the major psoriasis susceptibility locus identifies candidate susceptibility alleles within an HLA-C enhancer element.
Alex Clop, Anna Bertoni, Sarah L Spain, Michael A Simpson, Venu Pullabhatla

PLoS One· April 2014

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Conditional analysis identifies three novel major histocompatibility complex loci associated with psoriasis.
Jo Knight, Sarah L Spain, Francesca Capon, Adrian Hayday, Frank O Nestle, Alex Clop

Hum Mol Genet· December 2012

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A genome-wide association study of female sexual dysfunction.
Andrea Burri, Pirro Hysi, Alex Clop, Qazi Rahman, Tim D Spector

PLoS One· August 2012

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Allele-specific cytokine responses at the HLA-C locus: implications for psoriasis.
Christian Hundhausen, Anna Bertoni, Rose K Mak, Elisabetta Botti, Paola Di Meglio, Alex Clop

J Invest Dermatol· March 2012

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A systems model for immune cell interactions unravels the mechanism of inflammation in human skin.
Najl V Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolay V Kotov, Gareth Williams, Alex Clop

PLoS Comput Biol· December 2010

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Insights into the importance of miRNA-related polymorphisms to heart disease.
Alex Clop

Hum Mutat· August 2009

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