Publications by authors named "Alex D Washburne"

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Correction: Prioritizing surveillance of Nipah virus in India.
Raina K Plowright, Daniel J Becker, Daniel E Crowley, Alex D Washburne, Tao Huang

PLoS Negl Trop Dis· February 2023

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Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome.
Stilianos Fodelianakis, Alex D Washburne, Massimo Bourquin, Paraskevi Pramateftaki, Tyler J Kohler

ISME J· March 2022

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Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England.
Nicholas G Davies, Sam Abbott, Rosanna C Barnard, Christopher I Jarvis, Adam J Kucharski, Alex D Washburne

Science· April 2021

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Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States.
Justin D Silverman, Nathaniel Hupert, Alex D Washburne

Sci Transl Med· July 2020

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SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases.
Fuqing Wu, Jianbo Zhang, Amy Xiao, Xiaoqiong Gu, Wei Lin Lee, Alex D Washburne

mSystems· July 2020

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A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome.
John L Darcy, Alex D Washburne, Michael S Robeson, Tiffany Prest, Steven K Schmidt

ISME J· June 2020

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Ecological and evolutionary drivers of haemoplasma infection and bacterial genotype sharing in a Neotropical bat community.
Daniel J Becker, Kelly A Speer, Alexis M Brown, M Brock Fenton, Alex D Washburne

Mol Ecol· April 2020

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Rare microbial taxa emerge when communities collide: freshwater and marine microbiome responses to experimental mixing.
Jennifer D Rocca, Marie Simonin, Emily S Bernhardt, Alex D Washburne, Justin P Wright

Ecology· March 2020

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Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses.
Daniel J Becker, Daniel E Crowley, Alex D Washburne, Raina K Plowright

Biol Lett· December 2019

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Percolation models of pathogen spillover.
Alex D Washburne, Daniel E Crowley, Daniel J Becker, Kezia R Manlove, Marissa L Childs

Philos Trans R Soc Lond B Biol Sci· September 2019

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The problem of scale in the prediction and management of pathogen spillover.
Daniel J Becker, Alex D Washburne, Christina L Faust, Erin A Mordecai, Raina K Plowright

Philos Trans R Soc Lond B Biol Sci· September 2019

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Dynamic and integrative approaches to understanding pathogen spillover.
Daniel J Becker, Alex D Washburne, Christina L Faust, Juliet R C Pulliam, Erin A Mordecai

Philos Trans R Soc Lond B Biol Sci· September 2019

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Prioritizing surveillance of Nipah virus in India.
Raina K Plowright, Daniel J Becker, Daniel E Crowley, Alex D Washburne, Tao Huang

PLoS Negl Trop Dis· June 2019

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The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities.
Jennifer D Rocca, Marie Simonin, Joanna R Blaszczak, Jessica G Ernakovich, Sean M Gibbons, Alex D Washburne

Front Microbiol· January 2019

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Taxonomic patterns in the zoonotic potential of mammalian viruses.
Alex D Washburne, Daniel E Crowley, Daniel J Becker, Kevin J Olival, Matthew Taylor

PeerJ· November 2018

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Methods for phylogenetic analysis of microbiome data.
Alex D Washburne, James T Morton, Jon Sanders, Daniel McDonald, Qiyun Zhu

Nat Microbiol· June 2018

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Signatures of ecological processes in microbial community time series.
Karoline Faust, Franziska Bauchinger, Béatrice Laroche, Sophie de Buyl, Leo Lahti, Alex D Washburne

Microbiome· June 2018

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A phylogenetic transform enhances analysis of compositional microbiota data.
Justin D Silverman, Alex D Washburne, Sayan Mukherjee, Lawrence A David

Elife· February 2017

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Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets.
Alex D Washburne, Justin D Silverman, Jonathan W Leff, Dominic J Bennett, John L Darcy

PeerJ· February 2017

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Novel Covariance-Based Neutrality Test of Time-Series Data Reveals Asymmetries in Ecological and Economic Systems.
Alex D Washburne, Joshua W Burby, Daniel Lacker

PLoS Comput Biol· September 2016

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