Publications by authors named "Michael S Robeson"

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Fueling the fire: colonocyte metabolism and its effect on the colonic epithelia.
Manuel Martínez-Ruiz, Michael S Robeson, Brian D Piccolo

Crit Rev Food Sci Nutr· November 2025

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The effect of obesity and dietary soy protein with different isoflavone levels on fecal microbial composition in lean and obese Zucker rats over 9- and 18-week periods.
Wei Li, Michael S Robeson, Christopher E Randolph, Reza Hakkak

Food Funct· September 2025

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MOSHPIT: accessible, reproducible metagenome data science on the QIIME 2 framework.
Michal Ziemski, Liz Gehret, Anthony Simard, Santiago Castro Dau, Vinzent Risch, Michael S Robeson

bioRxiv· February 2025

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Bioinformatics challenges for profiling the microbiome in cancer: pitfalls and opportunities.
Nicholas A Bokulich, Michael S Robeson

Trends Microbiol· December 2024

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Short-Term Ingestion of Essential Amino Acid Based Nutritional Supplements or Whey Protein Improves the Physical Function of Older Adults Independently of Gut Microbiome.
Gohar Azhar, Ambika Verma, Michael S Robeson, Pankaj Patyal, Intawat Nookaew

Mol Nutr Food Res· March 2024

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Colonic epithelial hypoxia remains constant during the progression of diabetes in male UC Davis type 2 diabetes mellitus rats.
Brian D Piccolo, James L Graham, Leslie Tabor-Simecka, Christopher E Randolph, Becky Moody, Michael S Robeson

BMJ Open Diabetes Res Care· March 2024

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Physiological and cognitive changes after treatments of cyclophosphamide, methotrexate, and fluorouracil: implications of the gut microbiome and depressive-like behavior.
Christa Corley, Taylor McElroy, Bhavana Sridharan, Madison Trujillo, Pilar Simmons, Michael S Robeson

Front Neurosci· October 2023

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Gut Microbes Are Associated with the Vascular Beneficial Effects of Dietary Strawberry on Metabolic Syndrome-Induced Vascular Inflammation.
James Coleman Miller, Adhini Kuppuswamy Satheesh Babu, Chrissa Petersen, Umesh D Wankhade, Michael S Robeson

Mol Nutr Food Res· November 2022

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Iron deficient diets modify the gut microbiome and reduce the severity of enteric infection in a mouse model of S. Typhimurium-induced enterocolitis.
James R Ippolito, Brian D Piccolo, Michael S Robeson, David E Barney, Jamel Ali

J Nutr Biochem· September 2022

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Complexities of Inferring Symbiont Function: Symbiont Dynamics in Social Amoeba Populations and Their Impacts on the Amoeba Microbiota.
James G DuBose, Michael S Robeson, Mackenzie Hoogshagen, Hunter Olsen, Tamara S Haselkorn

Appl Environ Microbiol· September 2022

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Bacterial and Fungal Adaptations in Cecum and Distal Colon of Piglets Fed With Dairy-Based Milk Formula in Comparison With Human Milk.
Ahmed Elolimy, Fernanda Rosa, Patricia Tripp, Mohamed Zeineldin, Anne K Bowlin, Michael S Robeson

Front Microbiol· March 2022

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Short-Term Metformin Treatment Enriches in an Obese Liver Steatosis Zucker Rat Model.
Michael S Robeson, Kanishka Manna, Christopher Randolph, Stephanie Byrum, Reza Hakkak

Front Microbiol· March 2022

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Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota.
Takeo Shibata, Mayumi Nakagawa, Hannah N Coleman, Sarah M Owens, William W Greenfield, Michael S Robeson

PLoS One· November 2021

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RESCRIPt: Reproducible sequence taxonomy reference database management.
Michael S Robeson, Devon R O'Rourke, Benjamin D Kaehler, Michal Ziemski, Matthew R Dillon

PLoS Comput Biol· November 2021

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Progression of diabetes is associated with changes in the ileal transcriptome and ileal-colon morphology in the UC Davis Type 2 Diabetes Mellitus rat.
Brian D Piccolo, James L Graham, Ping Kang, Christopher E Randolph, Kartik Shankar, Michael S Robeson

Physiol Rep· November 2021

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Cultivating the Bacterial Microbiota of Roots.
Dana L Carper, David J Weston, Aditya Barde, Collin M Timm, Tse-Yuan Lu, Michael S Robeson

mSystems· June 2021

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Multi-omics data integration considerations and study design for biological systems and disease.
Stefan Graw, Kevin Chappell, Charity L Washam, Allen Gies, Jordan Bird, Michael S Robeson

Mol Omics· April 2021

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Characterization of the bacterial microbiomes of social amoebae and exploration of the roles of host and environment on microbiome composition.
Eleni Sallinger, Michael S Robeson, Tamara S Haselkorn

Environ Microbiol· January 2021

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Mash-based analyses of Escherichia coli genomes reveal 14 distinct phylogroups.
Kaleb Abram, Zulema Udaondo, Carissa Bleker, Visanu Wanchai, Trudy M Wassenaar, Michael S Robeson

Commun Biol· January 2021

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Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods.
Nicholas A Bokulich, Michal Ziemski, Michael S Robeson, Benjamin D Kaehler

Comput Struct Biotechnol J· December 2020

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A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome.
John L Darcy, Alex D Washburne, Michael S Robeson, Tiffany Prest, Steven K Schmidt

ISME J· June 2020

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16S rRNA Gene Amplicon Profiling of Baby and Adult Captive Elephants in Thailand.
Sangam Kandel, Supaphen Sripiboon, Piroon Jenjaroenpun, David W Ussery, Intawat Nookaew, Michael S Robeson

Microbiol Resour Announc· June 2020

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Cervical Microbiome and Response to a Human Papillomavirus Therapeutic Vaccine for Treating High-Grade Cervical Squamous Intraepithelial Lesion.
Rahul Ravilla, Hannah N Coleman, Cheryl-Emiliane Chow, Luisa Chan, Barbara J Fuhrman, Michael Scott Robeson

Integr Cancer Ther· April 2020

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Mixed ancestry from wild and domestic lineages contributes to the rapid expansion of invasive feral swine.
Timothy J Smyser, Michael A Tabak, Chris Slootmaker, Michael S Robeson, Ryan S Miller

Mol Ecol· March 2020

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Gastrointestinal Tract Dysbiosis Enhances Distal Tumor Progression through Suppression of Leukocyte Trafficking.
Samir V Jenkins, Michael S Robeson, Robert J Griffin, Charles M Quick, Eric R Siegel

Cancer Res· December 2019

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