Publications by authors named "Alex Harkess"

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The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination.
Rose A Marks, John T Lovell, Sarah B Carey, Llewelyn Van Der Pas, Nyaradzai M Chimukuche, Alex Harkess

New Phytol· January 2026

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Chromosome-scale assemblies of flowering dogwood cultivars enable identification of candidate genes regulating anthocyanin biosynthesis in leaves and bracts.
Trinity P Hamm, Sarah L Boggess, Marcin Nowicki, Denita Hadziabdic, DeWayne Shoemaker, Alex Harkess

BMC Plant Biol· December 2025

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Gene duplication dynamics and regulatory evolution shape the diversification of Asteraceae.
Erika R Moore-Pollard, Paige A Ellestad, Brannan R Cliver, Jakub Baczyński, Matthew D Pollard, Alex Harkess

bioRxiv· November 2025

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Chromosome level assembly and annotation of Cuscuta campestris Yunck. ("field dodder"), a model parasitic plant.
Juan D Cerda-Herrera, Huiting Zhang, Eric K Wafula, Supral Adhikari, So-Yon Park, Alex Harkess

G3 (Bethesda)· October 2025

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Characterization of the complete plastid genome sequence of Á.J. Pérez & E. Rea (Magnoliaceae), a newly described species endemic to the Ecuadorian Andes.
Edison Rea, Zhi-Qiong Mo, Álvaro J Pérez, Hannah Mueller, Alex Harkess

Mitochondrial DNA B Resour· September 2025

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The annotated, chromosome-scale Salicornia depressa (American pickleweed) genome.
Cooper Kimball-Rhines, Alice E Kaisla, Scarlet Taveras Guzman, Emily Mello, Karol Vanessa Rojas Ramirez, Alex Harkess

J Hered· September 2025

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Mesopolyploidy as a taxonomic clade marker for Brassica and relatives (tribe Brassiceae).
Shawn K Thomas, R Shawn Abrahams, Daniel Robert Kick, Nora Walden, Gavin Conant, Alex Harkess

Ann Bot· August 2025

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Domesticated cannabinoid synthases amid a wild mosaic cannabis pangenome.
Ryan C Lynch, Lillian K Padgitt-Cobb, Andrea R Garfinkel, Brian J Knaus, Nolan T Hartwick, Alex Harkess

Nature· July 2025

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Accelerating domestication of perennial plants with genomics.
Renan Souza, David L Van Tassel, Walid Korani, Alex Harkess, Josh Clevenger

iScience· July 2025

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An X-linked sex determination mechanism in cannabis and hop.
Sarah B Carey, Philip C Bentz, John T Lovell, Laramie M Akozbek, Zack A Myers, Alex Harkess

bioRxiv· July 2025

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Parameterizing Pantherinae: De Novo Mutation Rate Estimates from Panthera and Neofelis Pedigrees.
Ellie E Armstrong, Sarah B Carey, Alex Harkess, Gabriele Zenato Lazzari, Katherine A Solari

Genome Biol Evol· April 2025

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Unlocking saponin biosynthesis in soapwort.
Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Alex Harkess

Nat Chem Biol· February 2025

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Chromosome Numbers and Reproductive Life Cycles in Green Plants: A Phylotranscriptomic Perspective.
Rijan R Dhakal, Alex Harkess, Paul G Wolf

Plant Direct· January 2025

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Comparison of Recombination Rate, Reference Bias, and Unique Pangenomic Haplotypes in Using Seven De Novo Genome Assemblies.
George M Stack, Michael A Quade, Dustin G Wilkerson, Luis A Monserrate, Philip C Bentz, Alex Harkess

Int J Mol Sci· January 2025

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ZW sex chromosome structure in Amborella trichopoda.
Sarah B Carey, Laramie Aközbek, John T Lovell, Jerry Jenkins, Adam L Healey, Alex Harkess

Nat Plants· December 2024

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Disease resistance gene count increases with rainfall in .
Kyle Keepers, Kelsey Peterson, Andrew Raduski, Kathryn M Turner, David Van Tassel, Alex Harkess

Ecol Evol· September 2024

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Widespread application of apomixis in agriculture requires further study of natural apomicts.
Charity Z Goeckeritz, Xixi Zheng, Alex Harkess, Thomas Dresselhaus

iScience· September 2024

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A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'.
Huiting Zhang, Itsuhiro Ko, Abigail Eaker, Sabrina Haney, Ninh Khuu, Alex Harkess

G3 (Bethesda)· September 2024

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Complementing model species with model clades.
Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Alex E Harkess

Plant Cell· May 2024

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Why should we study plant sex chromosomes?
Deborah Charlesworth, Alex Harkess

Plant Cell· May 2024

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The unusual predominance of maintenance DNA methylation in Spirodela polyrhiza.
Alex Harkess, Adam J Bewick, Zefu Lu, Paul Fourounjian, Todd P Michael

G3 (Bethesda)· April 2024

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Chromosome-level assembly of the gray fox (Urocyon cinereoargenteus) confirms the basal loss of PRDM9 in Canidae.
Ellie E Armstrong, Ky L Bissell, H Sophia Fatima, Maya A Heikkinen, Anika Jessup, Alex Harkess

G3 (Bethesda)· April 2024

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A chromosome-scale assembly for 'd'Anjou' pear.
Alan Yocca, Mary Akinyuwa, Nick Bailey, Brannan Cliver, Harrison Estes, Alex Harkess

G3 (Bethesda)· March 2024

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An affordable and convenient diagnostic marker to identify male and female hop plants.
Shaun J Clare, Ryan M King, Anna L Tawril, Joshua S Havill, Gary J Muehlbauer, Alex Harkess

G3 (Bethesda)· December 2023

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Exploring the genetic landscape of nitrogen uptake in durum wheat: genome-wide characterization and expression profiling of NPF and NRT2 gene families.
Guglielmo Puccio, Rosolino Ingraffia, Dario Giambalvo, Alfonso S Frenda, Alex Harkess

Front Plant Sci· November 2023

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