Publications by authors named "Alan Yocca"

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ZW sex chromosome structure in Amborella trichopoda.
Sarah B Carey, Laramie Aközbek, John T Lovell, Jerry Jenkins, Adam L Healey, Alan Yocca

Nat Plants· December 2024

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A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'.
Huiting Zhang, Itsuhiro Ko, Abigail Eaker, Sabrina Haney, Ninh Khuu, Alan E Yocca

G3 (Bethesda)· September 2024

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Complementing model species with model clades.
Makenzie E Mabry, R Shawn Abrahams, Ihsan A Al-Shehbaz, William J Baker, Simon Barak, Alan Yocca

Plant Cell· May 2024

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A chromosome-scale assembly for 'd'Anjou' pear.
Alan Yocca, Mary Akinyuwa, Nick Bailey, Brannan Cliver, Harrison Estes

G3 (Bethesda)· March 2024

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A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.
Ben N Mansfeld, Alan Yocca, Shujun Ou, Alex Harkess, Erik Burchard

Plant J· November 2023

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Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts.
Alan E Yocca, Adrian Platts, Elizabeth Alger, Scott Teresi, Molla F Mengist

Hortic Res· November 2023

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Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts.
Alan E Yocca, Adrian Platts, Elizabeth Alger, Scott Teresi, Molla F Mengist

bioRxiv· August 2023

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Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit.
Nick W Albert, Massimo Iorizzo, Molla F Mengist, Sara Montanari, Juan Zalapa, Alan E Yocca

Plant Physiol· July 2023

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Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory.
Abigail E Bryson, Emily R Lanier, Kin H Lau, John P Hamilton, Brieanne Vaillancourt, Alan E Yocca

Nat Commun· January 2023

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Linnemannia elongata (Mortierellaceae) stimulates Arabidopsis thaliana aerial growth and responses to auxin, ethylene, and reactive oxygen species.
Natalie Vandepol, Julian Liber, Alan Yocca, Jason Matlock, Patrick Edger

PLoS One· April 2022

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There and back again; historical perspective and future directions for breeding and research studies.
Patrick P Edger, Massimo Iorizzo, Nahla V Bassil, Juliana Benevenuto, Luis Felipe V Ferrão, Alan E Yocca

Hortic Res· April 2022

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Machine learning approaches to identify core and dispensable genes in pangenomes.
Alan E Yocca, Patrick P Edger

Plant Genome· March 2022

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Current status and future perspectives on the evolution of cis-regulatory elements in plants.
Alan E Yocca, Patrick P Edger

Curr Opin Plant Biol· February 2022

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A chromosome-scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition.
Chen Wu, Cecilia Deng, Elena Hilario, Nick W Albert, Declan Lafferty, Alan Yocca

Mol Ecol Resour· January 2022

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Evolutionary history and pan-genome dynamics of strawberry ( spp.).
Qin Qiao, Patrick P Edger, Li Xue, La Qiong, Jie Lu, Alan E Yocca

Proc Natl Acad Sci U S A· November 2021

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Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana.
Alan E Yocca, Zefu Lu, Robert J Schmitz, Michael Freeling, Patrick P Edger

Mol Biol Evol· June 2021

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Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff.
Robert VanBuren, Ching Man Wai, Xuewen Wang, Jeremy Pardo, Alan E Yocca

Nat Commun· February 2020

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Reply to: Revisiting the origin of octoploid strawberry.
Patrick P Edger, Michael R McKain, Alan E Yocca, Steven J Knapp, Qin Qiao

Nat Genet· January 2020

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Disease Resistance Genetics and Genomics in Octoploid Strawberry.
Christopher R Barbey, Seonghee Lee, Sujeet Verma, Kevin A Bird, Alan E Yocca

G3 (Bethesda)· October 2019

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Author Correction: Origin and evolution of the octoploid strawberry genome.
Patrick P Edger, Thomas J Poorten, Robert VanBuren, Michael A Hardigan, Marivi Colle, Alan E Yocca

Nat Genet· April 2019

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Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.
Marivi Colle, Courtney P Leisner, Ching Man Wai, Shujun Ou, Kevin A Bird, Alan E Yocca

Gigascience· March 2019

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Origin and evolution of the octoploid strawberry genome.
Patrick P Edger, Thomas J Poorten, Robert VanBuren, Michael A Hardigan, Marivi Colle, Alan E Yocca

Nat Genet· March 2019

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