Publications by authors named "Alexander Zelikovsky"

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Estimating Enzyme Expression and Metabolic Pathway Activity in -Infected and Uninfected Mice.
Filipp Martin Rondel, Hafsa Farooq, Roya Hosseini, Akshay Juyal, Sergey Knyazev, Alexander Zelikovsky

J Comput Biol· February 2025

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Efficient Approximate Kernel Based Spike Sequence Classification.
Sarwan Ali, Bikram Sahoo, Muhammad Asad Khan, Alexander Zelikovsky, Imdad Ullah Khan

IEEE/ACM Trans Comput Biol Bioinform· December 2023

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18th International Symposium on Bioinformatics Research and Applications (ISBRA 2022).
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky

J Comput Biol· August 2023

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Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors.
Bikram Sahoo, Sarwan Ali, Pin-Yu Chen, Murray Patterson, Alexander Zelikovsky

Biomolecules· June 2023

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Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
Mukul S Bansal, Ion I Măndoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran, Alexander Zelikovsky

J Comput Biol· April 2023

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Benchmarking machine learning robustness in Covid-19 genome sequence classification.
Sarwan Ali, Bikram Sahoo, Alexander Zelikovsky, Pin-Yu Chen, Murray Patterson

Sci Rep· March 2023

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Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
Sumit Kumar Jha, Ion MĂndoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky

J Comput Biol· November 2021

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Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020).
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky

J Comput Biol· August 2021

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Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
Filipp Martin Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Alexander Zelikovsky

J Comput Biol· August 2021

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Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020).
Zhipeng Cai, Pavel Skums, Yuri Porozov, Alexander Zelikovsky

J Comput Biol· July 2021

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Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
Ion Mandoiu, T M Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky

J Comput Biol· February 2021

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Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.
Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky

Brief Bioinform· January 2021

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Preface: 14th International Symposium on Bioinformatics Research and Applications (ISBRA 2018).
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky

J Comput Biol· August 2019

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Automated quality control for a molecular surveillance system.
Seth Sims, Atkinson G Longmire, David S Campo, Sumathi Ramachandran, Magdalena Medrzycki, Alexander Zelikovsky

BMC Bioinformatics· October 2018

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Special Issue Preface: 13th International Symposium on BioinformaticsResearch and Applications (ISBRA 2017).
Zhipeng Cai, Pavel Skums, Alexander Zelikovsky

J Comput Biol· March 2018

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GaussianCpG: a Gaussian model for detection of CpG island in human genome sequences.
Ning Yu, Xuan Guo, Alexander Zelikovsky, Yi Pan

BMC Genomics· May 2017

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Inferring metabolic pathway activity levels from RNA-Seq data.
Yvette Temate-Tiagueu, Sahar Al Seesi, Meril Mathew, Igor Mandric, Alex Rodriguez, Alexander Zelikovsky

BMC Genomics· August 2016

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Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates.
Sahar Al Seesi, Yvette Temate Tiagueu, Alexander Zelikovsky, Ion I Măndoiu

BMC Genomics· July 2015

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Guest editors' introduction to the special section on bioinformatics research and applications.
Ion I Mandoiu, Jianxin Wang, Alexander Zelikovsky

IEEE/ACM Trans Comput Biol Bioinform· September 2014

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Guest editors’ introduction to the special section on bioinformatics research and applications.
Jianer Chen, Alexander Zelikovsky

IEEE/ACM Trans Comput Biol Bioinform· October 2012

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Guest editors' introduction.
Jianer Chen, Ion Măndoiu, Raj Sunderraman, Jianxin Wang, Alexander Zelikovsky

BMC Bioinformatics· June 2012

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Guest editors' introduction to the special section on bioinformatics research and applications.
Mark Borodovsky, Teresa M Przytycka, Sanguthevar Rajasekaran, Alexander Zelikovsky

IEEE/ACM Trans Comput Biol Bioinform· September 2011

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Association testing by haplotype-sharing methods applicable to whole-genome analysis.
Ilja M Nolte, André R de Vries, Geert T Spijker, Ritsert C Jansen, Dumitru Brinza, Alexander Zelikovsky

BMC Proc· December 2009

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MetNetAligner: a web service tool for metabolic network alignments.
Qiong Cheng, Robert Harrison, Alexander Zelikovsky

Bioinformatics· August 2009

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Guest editors' introduction to the special section on bioinformatics research and applications.
Ion I Mandoiu, Yi Pan, Alexander Zelikovsky

IEEE/ACM Trans Comput Biol Bioinform· September 2008

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