Publications by authors named "Ion Mandoiu"

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MHASS: Microbiome HiFi Amplicon Sequencing Simulator.
Rye Howard-Stone, Ion I Măndoiu

Bioinformatics· December 2025

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Cecal microbiome transplantation without antibiotic preconditioning standardizes murine microbiomes.
Rye Howard-Stone, Philip Gerwin, Darien Capunitan, Mark Driscoll, Eric Jackson

Front Microbiol· September 2025

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12th International Computational Advances in Bio and Medical Sciences (ICCABS 2023).
Mukul S Bansal, Wei Chen, Yury Khudyakov, Ion I Măndoiu, Marmar R Moussa

J Comput Biol· August 2025

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A frameshift-generated cancer neoepitope that controls tumor burden in prophylaxis as well as therapy.
Mariam M George, Cory A Brennick, Adam T Hagymasi, Tatiana V Shcheglova, Sahar Al Seesi, Ion I Mandoiu

J Immunol· June 2025

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First Mitogenome of the Critically Endangered Arabian Leopard ().
Fahad H Alqahtani, Ion I Măndoiu, Badr M Al-Shomrani, Sulaiman Al-Hashmi, Fatemeh Jamshidi-Adegani

Animals (Basel)· May 2025

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Low-avidity T cells drive endogenous tumor immunity in mice and humans.
Summit Singhaviranon, Joseph P Dempsey, Adam T Hagymasi, Ion I Mandoiu, Pramod K Srivastava

Nat Immunol· February 2025

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CD8+ T Cell-Dependent Antitumor Activity In Vivo of a Mass Spectrometry-Identified Neoepitope despite Undetectable CD8+ Immunogenicity In Vitro.
Marc A Gillig, Cory A Brennick, Mariam M George, Jeremy L Balsbaugh, Tatiana V Shcheglova, Ion I Mandoiu

J Immunol· December 2023

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Special Issue: 11th International Computational Advances in Bio and Medical Sciences (ICCABS 2021).
Mukul S Bansal, Ion I Măndoiu, Marmar Moussa, Murray Patterson, Sanguthevar Rajasekaran

J Comput Biol· April 2023

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GeNeo: A Bioinformatics Toolbox for Genomics-Guided Neoepitope Prediction.
Sahar Al Seesi, Anas Al-Okaily, Tatiana V Shcheglova, Elham Sherafat, Fahad H Alqahtani

J Comput Biol· April 2023

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Transcriptomic Responses of Upon Treatments of -Cinnamaldehyde, Carvacrol, and Eugenol.
Saurav Ranjitkar, Jingyue Ellie Duan, Kanokwan Srirattana, Fahad Alqahtani, Edan R Tulman, Ion Mandoiu

Front Microbiol· June 2022

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TNet: Transmission Network Inference Using Within-Host Strain Diversity and its Application to Geographical Tracking of COVID-19 Spread.
Saurav Dhar, Chengchen Zhang, Ion I Mandoiu, Mukul S Bansal

IEEE/ACM Trans Comput Biol Bioinform· February 2022

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Reversion analysis reveals the in vivo immunogenicity of a poorly MHC I-binding cancer neoepitope.
Hakimeh Ebrahimi-Nik, Marmar Moussa, Ryan P Englander, Summit Singhaviranon, Justine Michaux, Ion I Mandoiu

Nat Commun· November 2021

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Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020).
Sumit Kumar Jha, Ion MĂndoiu, Sanguthevar Rajasekaran, Pavel Skums, Alexander Zelikovsky

J Comput Biol· November 2021

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SC1: A Tool for Interactive Web-Based Single-Cell RNA-Seq Data Analysis.
Marmar Moussa, Ion I Măndoiu

J Comput Biol· August 2021

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Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.
Filipp Martin Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric

J Comput Biol· August 2021

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TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference.
Samuel Sledzieski, Chengchen Zhang, Ion Mandoiu, Mukul S Bansal

Pac Symp Biocomput· April 2021

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An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection.
Cory A Brennick, Mariam M George, Marmar M Moussa, Adam T Hagymasi, Sahar Al Seesi, Ion I Mandoiu

J Clin Invest· February 2021

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Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).
Ion Mandoiu, T M Murali, Giri Narasimhan, Sanguthevar Rajasekaran, Pavel Skums

J Comput Biol· February 2021

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Direct reprogramming of oligodendrocyte precursor cells into GABAergic inhibitory neurons by a single homeodomain transcription factor Dlx2.
Linda L Boshans, Heun Soh, William M Wood, Timothy M Nolan, Ion I Mandoiu

Sci Rep· February 2021

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Semi-supervised learning for somatic variant calling and peptide identification in personalized cancer immunotherapy.
Elham Sherafat, Jordan Force, Ion I Măndoiu

BMC Bioinformatics· December 2020

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Statistical Mitogenome Assembly with RepeaTs.
Fahad Alqahtani, Ion I Măndoiu

J Comput Biol· September 2020

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Sympathetic nervous tone limits the development of myeloid-derived suppressor cells.
James T Nevin, Marmar Moussa, William L Corwin, Ion I Mandoiu, Pramod K Srivastava

Sci Immunol· September 2020

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Complete mitochondrial genome of the water vole, (Cricetidae, Rodentia).
Fahad Alqahtani, Drew Duckett, Stacy Pirro, Ion I Mandoiu

Mitochondrial DNA B Resour· June 2020

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Eleven grand challenges in single-cell data science.
David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Ion I Mandoiu

Genome Biol· February 2020

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The Chromatin Environment Around Interneuron Genes in Oligodendrocyte Precursor Cells and Their Potential for Interneuron Reprograming.
Linda L Boshans, Daniel C Factor, Vijender Singh, Jia Liu, Chuntao Zhao, Ion Mandoiu

Front Neurosci· August 2019

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