Publications by authors named "Alexandre Melnikov"

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Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice.
Gregory P Donaldson, Wen-Chi Chou, Abigail L Manson, Peter Rogov, Thomas Abeel, Alexandre Melnikov

Nat Microbiol· May 2020

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Early Epstein-Barr Virus Genomic Diversity and Convergence toward the B95.8 Genome in Primary Infection.
Eric R Weiss, Susanna L Lamers, Jennifer L Henderson, Alexandre Melnikov, Mohan Somasundaran

J Virol· January 2018

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Longitudinal genomic surveillance of Plasmodium falciparum malaria parasites reveals complex genomic architecture of emerging artemisinin resistance.
Gustavo C Cerqueira, Ian H Cheeseman, Steve F Schaffner, Shalini Nair, Marina McDew-White, Alexandre Melnikov

Genome Biol· April 2017

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Systematic dissection of genomic features determining transcription factor binding and enhancer function.
Sharon R Grossman, Xiaolan Zhang, Li Wang, Jesse Engreitz, Alexandre Melnikov

Proc Natl Acad Sci U S A· February 2017

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Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.
Jason Ernst, Alexandre Melnikov, Xiaolan Zhang, Li Wang, Peter Rogov

Nat Biotechnol· November 2016

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Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.
Daniel N Hupalo, Zunping Luo, Alexandre Melnikov, Patrick L Sutton, Peter Rogov

Nat Genet· August 2016

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Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.
Jacob C Ulirsch, Satish K Nandakumar, Li Wang, Felix C Giani, Xiaolan Zhang, Alexandre Melnikov

Cell· June 2016

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Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.
Liang Ma, Zehua Chen, Da Wei Huang, Geetha Kutty, Mayumi Ishihara, Alexandre Melnikov

Nat Commun· February 2016

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Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Alexandre Melnikov

Proc Natl Acad Sci U S A· November 2015

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Development of a single nucleotide polymorphism barcode to genotype Plasmodium vivax infections.
Mary Lynn Baniecki, Aubrey L Faust, Stephen F Schaffner, Daniel J Park, Kevin Galinsky, Alexandre Melnikov

PLoS Negl Trop Dis· March 2015

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Comprehensive mutational scanning of a kinase in vivo reveals substrate-dependent fitness landscapes.
Alexandre Melnikov, Peter Rogov, Li Wang, Andreas Gnirke, Tarjei S Mikkelsen

Nucleic Acids Res· August 2014

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Massively parallel reporter assays in cultured mammalian cells.
Alexandre Melnikov, Xiaolan Zhang, Peter Rogov, Li Wang, Tarjei S Mikkelsen

J Vis Exp· August 2014

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Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay.
Pouya Kheradpour, Jason Ernst, Alexandre Melnikov, Peter Rogov, Li Wang

Genome Res· May 2013

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Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.
Alexandre Melnikov, Anand Murugan, Xiaolan Zhang, Tiberiu Tesileanu, Li Wang

Nat Biotechnol· February 2012

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Hybrid selection for sequencing pathogen genomes from clinical samples.
Alexandre Melnikov, Kevin Galinsky, Peter Rogov, Timothy Fennell, Daria Van Tyne

Genome Biol· August 2011

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Targeted exon sequencing by in-solution hybrid selection.
Brendan Blumenstiel, Kristian Cibulskis, Sheila Fisher, Matthew DeFelice, Andrew Barry, Alexandre Melnikov

Curr Protoc Hum Genet· July 2010

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Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts.
Joshua Z Levin, Michael F Berger, Xian Adiconis, Peter Rogov, Alexandre Melnikov

Genome Biol· January 2010

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Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing.
Andreas Gnirke, Alexandre Melnikov, Jared Maguire, Peter Rogov, Emily M LeProust

Nat Biotechnol· February 2009

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Genome sequence, comparative analysis and haplotype structure of the domestic dog.
Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Alexandre Melnikov

Nature· December 2005

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