Publications by authors named "Allison Weakley"

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Gut microbiota gate host exposure to cholinesterase inhibitors from dietary Solanums.
Catherine S Liou, Tijs Louwies, Mikhail Iakiviak, Jakub Rajniak, Pallavi P Murugkar, Allison Weakley

bioRxiv· December 2025

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Gut microbial composition modulates food-specific CD4 T cells in food allergy.
Alexa R Weingarden, Flannery S Dahlberg, Caroline N Broude, Xiandong Meng, Sunit Jain, Allison M Weakley

bioRxiv· October 2025

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Comprehensive profiling of genomic invertons in defined gut microbial community reveals associations with intestinal colonization and surface adhesion.
Xiaofan Jin, Alice G Cheng, Rachael B Chanin, Feiqiao B Yu, Alejandra Dimas, Allison Weakley

Microbiome· March 2025

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A gut pathobiont regulates circulating glycine and host metabolism in a twin study comparing vegan and omnivorous diets.
Matthew M Carter, Xianfeng Zeng, Catherine P Ward, Matthew Landry, Dalia Perelman, Allison M Weakley

medRxiv· January 2025

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Coordinated variation in the immune systems and microbiomes of healthy humans is linked to tonic interferon states.
Joel Babdor, Ravi K Patel, Brittany Davidson, Cecilia Noecker, Maha Rahim, Allison M Weakley

bioRxiv· December 2024

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Mapping the T cell repertoire to a complex gut bacterial community.
Kazuki Nagashima, Aishan Zhao, Katayoon Atabakhsh, Minwoo Bae, Jamie E Blum, Allison Weakley

Nature· September 2023

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A widely distributed gene cluster compensates for uricase loss in hominids.
Yuanyuan Liu, J Bryce Jarman, Yen S Low, Hannah E Augustijn, Steven Huang, Allison M Weakley

Cell· September 2023

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A widely distributed gene cluster compensates for uricase loss in hominids.
Yuanyuan Liu, J Bryce Jarman, Yen S Low, Hannah E Augustijn, Steven Huang, Allison M Weakley

Cell· August 2023

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Culturing of a complex gut microbial community in mucin-hydrogel carriers reveals strain- and gene-associated spatial organization.
Xiaofan Jin, Feiqiao B Yu, Jia Yan, Allison M Weakley, Veronika Dubinkina

Nat Commun· June 2023

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Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.
Min Wang, Lucas J Osborn, Sunit Jain, Xiandong Meng, Allison Weakley

Cell· June 2023

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Design, construction, and in vivo augmentation of a complex gut microbiome.
Alice G Cheng, Po-Yi Ho, Andrés Aranda-Díaz, Sunit Jain, Feiqiao B Yu, Allison Weakley

Cell· September 2022

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Spontaneous mutation rate estimates for the principal malaria vectors Anopheles coluzzii and Anopheles stephensi.
Iliyas Rashid, Melina Campos, Travis Collier, Marc Crepeau, Allison Weakley

Sci Rep· January 2022

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Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome.
Kathy N Lam, Peter Spanogiannopoulos, Paola Soto-Perez, Margaret Alexander, Matthew J Nalley, Allison M Weakley

Cell Rep· November 2021

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Author Correction: Efficient production of male Wolbachia-infected Aedes aegypti mosquitoes enables large-scale suppression of wild populations.
Jacob E Crawford, David W Clarke, Victor Criswell, Mark Desnoyer, Devon Cornel, Allison M Weakley

Nat Biotechnol· August 2020

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Ethanol as a potential mosquito sample storage medium for RNA preservation.
Mirsha G Torres, Allison M Weakley, James D Hibbert, Oscar D Kirstein, Gregory C Lanzaro

F1000Res· June 2020

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Efficient production of male Wolbachia-infected Aedes aegypti mosquitoes enables large-scale suppression of wild populations.
Jacob E Crawford, David W Clarke, Victor Criswell, Mark Desnoyer, Devon Cornel, Allison M Weakley

Nat Biotechnol· April 2020

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Improved reference genome of Aedes aegypti informs arbovirus vector control.
Benjamin J Matthews, Olga Dudchenko, Sarah B Kingan, Sergey Koren, Igor Antoshechkin, Allison M Weakley

Nature· November 2018

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The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis.
Bradley J Main, Yoosook Lee, Heather M Ferguson, Katharina S Kreppel, Anicet Kihonda, Allison M Weakley

PLoS Genet· September 2016

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A multi-detection assay for malaria transmitting mosquitoes.
Yoosook Lee, Allison M Weakley, Catelyn C Nieman, Julia Malvick, Gregory C Lanzaro

J Vis Exp· February 2015

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Plasmodium falciparum infection rates for some Anopheles spp. from Guinea-Bissau, West Africa.
Michelle R Sanford, Anthony J Cornel, Catelyn C Nieman, Joao Dinis, Clare D Marsden, Allison M Weakley

F1000Res· November 2014

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Diversity, differentiation, and linkage disequilibrium: prospects for association mapping in the malaria vector Anopheles arabiensis.
Clare Diana Marsden, Yoosook Lee, Katharina Kreppel, Allison Weakley, Anthony Cornel

G3 (Bethesda)· January 2014

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