Publications by authors named "Sunit Jain"

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Gut microbial composition modulates food-specific CD4 T cells in food allergy.
Alexa R Weingarden, Flannery S Dahlberg, Caroline N Broude, Xiandong Meng, Sunit Jain

bioRxiv· October 2025

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Discovery and engineering of the antibody response to a prominent skin commensal.
Djenet Bousbaine, Katherine D Bauman, Y Erin Chen, Pranav V Lalgudi, Tam T D Nguyen, Sunit Jain

Nature· February 2025

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Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction.
Surya Tripathi, Carlos Geert Pieter Voogdt, Stefan Oliver Bassler, Mary Anderson, Po-Hsun Huang, Sunit Jain

Cell Rep· January 2024

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Discovery and engineering of the antibody response against a prominent skin commensal.
Djenet Bousbaine, Katherine D Bauman, Y Erin Chen, Victor K Yu, Pranav V Lalgudi, Sunit Jain

bioRxiv· January 2024

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Mapping the T cell repertoire to a complex gut bacterial community.
Kazuki Nagashima, Aishan Zhao, Katayoon Atabakhsh, Minwoo Bae, Jamie E Blum, Sunit Jain

Nature· September 2023

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Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes.
Matthew M Carter, Matthew R Olm, Bryan D Merrill, Dylan Dahan, Surya Tripathi, Sunit Jain

Cell· July 2023

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Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.
Min Wang, Lucas J Osborn, Sunit Jain, Xiandong Meng, Allison Weakley

Cell· June 2023

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Ultra-deep Sequencing of Hadza Hunter-Gatherers Recovers Vanishing Gut Microbes.
Bryan D Merrill, Matthew M Carter, Matthew R Olm, Dylan Dahan, Surya Tripathi, Sunit Jain

bioRxiv· October 2022

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Design, construction, and in vivo augmentation of a complex gut microbiome.
Alice G Cheng, Po-Yi Ho, Andrés Aranda-Díaz, Sunit Jain, Feiqiao B Yu

Cell· September 2022

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Robust variation in infant gut microbiome assembly across a spectrum of lifestyles.
Matthew R Olm, Dylan Dahan, Matthew M Carter, Bryan D Merrill, Feiqiao B Yu, Sunit Jain

Science· June 2022

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Omics-Inferred Partitioning and Expression of Diverse Biogeochemical Functions in a Low-O Cyanobacterial Mat Community.
Sharon L Grim, Alexander A Voorhies, Bopaiah A Biddanda, Sunit Jain, Stephen C Nold

mSystems· December 2021

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Elucidating the impact of microbial community biodiversity on pharmaceutical biotransformation during wastewater treatment.
Lauren B Stadler, Jeseth Delgado Vela, Sunit Jain, Gregory J Dick, Nancy G Love

Microb Biotechnol· November 2018

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Airborne Bacteria in Earth's Lower Stratosphere Resemble Taxa Detected in the Troposphere: Results From a New NASA Aircraft Bioaerosol Collector (ABC).
David J Smith, Jayamary Divya Ravichandar, Sunit Jain, Dale W Griffin, Hongbin Yu, Crystal Jaing

Front Microbiol· August 2018

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Unraveling the Physiological Roles of the Cyanobacterium Geitlerinema sp. BBD and Other Black Band Disease Community Members through Genomic Analysis of a Mixed Culture.
Paul A Den Uyl, Laurie L Richardson, Sunit Jain, Gregory J Dick

PLoS One· July 2017

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Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of in Freshwater Lakes.
Michelle A Berry, Jeffrey D White, Timothy W Davis, Sunit Jain, Thomas H Johengen

Front Microbiol· March 2017

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Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes.
Meng Li, Sunit Jain, Gregory J Dick

Front Microbiol· August 2016

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Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity.
Beverly E Flood, Palmer Fliss, Daniel S Jones, Gregory J Dick, Sunit Jain

Front Microbiol· May 2016

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Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea.
Meng Li, Brett J Baker, Karthik Anantharaman, Sunit Jain, John A Breier

Nat Commun· November 2015

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Identification and analysis of the bacterial endosymbiont specialized for production of the chemotherapeutic natural product ET-743.
Michael M Schofield, Sunit Jain, Daphne Porat, Gregory J Dick, David H Sherman

Environ Microbiol· October 2015

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Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.
Alexey Vorobev, Sheeja Jagadevan, Sunit Jain, Karthik Anantharaman, Gregory J Dick

Appl Environ Microbiol· May 2014

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Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics.
Cody S Sheik, Sunit Jain, Gregory J Dick

Environ Microbiol· January 2014

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Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume.
Meng Li, Sunit Jain, Brett J Baker, Chris Taylor, Gregory J Dick

Environ Microbiol· January 2014

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Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling.
Brett J Baker, Cody S Sheik, Chris A Taylor, Sunit Jain, Ashwini Bhasi

ISME J· October 2013

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The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs.
Ryan A Lesniewski, Sunit Jain, Karthik Anantharaman, Patrick D Schloss, Gregory J Dick

ISME J· December 2012

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