Publications by authors named "Alok Joglekar"

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A microenvironment-driven HLA-II-associated insulin neoantigen elicits persistent memory T cell activation in diabetes.
Neetu Srivastava, Anthony N Vomund, Rongzhen Yu, Orion J Peterson, Yuqing Yang, Alok V Joglekar

Nat Immunol· January 2026

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TIRTL-seq: heroes with T-SHELL.
Mary Melissa Roland, Alok V Joglekar

Nat Methods· December 2025

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T Cell Antigen Discovery Using Cell-Based Epitope Libraries.
Paul M Zdinak, Sanya Arshad, Venkata Krishna Kanth Makani, Alok V Joglekar

Methods Mol Biol· November 2025

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A microenvironment-driven, HLA-II-associated insulin neoantigen elicits persistent memory T cell activation in diabetes.
Neetu Srivastava, Anthony N Vomund, Rongzhen Yu, Orion J Peterson, Yuqing Yang, Alok V Joglekar

bioRxiv· September 2025

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Sliding Window Interaction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.
Jane C Siwek, Alisa A Omelchenko, Prabal Chhibbar, Sanya Arshad, AnnaElaine Rosengart, Alok V Joglekar

Nat Methods· August 2025

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CD8+ TEMRAs in severe asthma associate with asthma symptom duration and escape proliferation arrest.
Richard P Ramonell, Timothy B Oriss, Jessica C McCreary-Partyka, Sagar L Kale, Nicole R Brandon, Alok V Joglekar

JCI Insight· April 2025

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Immunopeptidomics for autoimmunity: unlocking the chamber of immune secrets.
Sanya Arshad, Benjamin Cameron, Alok V Joglekar

NPJ Syst Biol Appl· January 2025

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Temporal dynamics and genomic programming of plasma cell fates.
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Alok Joglekar

Nat Immunol· June 2024

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SLIDE: Significant Latent Factor Interaction Discovery and Exploration across biological domains.
Javad Rahimikollu, Hanxi Xiao, AnnaElaine Rosengart, Aaron B I Rosen, Tracy Tabib, Alok V Joglekar

Nat Methods· May 2024

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Living in Syn: T Cell Antigen Identification Based on Synapse Sequencing.
Venkata Krishna Kanth Makani, Alok V Joglekar

Cancer Immunol Res· May 2024

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De novo identification of CD4 T cell epitopes.
Paul M Zdinak, Nishtha Trivedi, Stephanie Grebinoski, Jessica Torrey, Eduardo Zarate Martinez, Alok V Joglekar

Nat Methods· May 2024

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Sliding Window INteraction Grammar (SWING): a generalized interaction language model for peptide and protein interactions.
Alisa A Omelchenko, Jane C Siwek, Prabal Chhibbar, Sanya Arshad, Iliyan Nazarali, Alok V Joglekar

bioRxiv· May 2024

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The beta cell-immune cell interface in type 1 diabetes (T1D).
Eddie A James, Alok V Joglekar, Amelia K Linnemann, Holger A Russ, Sally C Kent

Mol Metab· December 2023

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Temporal dynamics and genomic programming of plasma cell fates.
Godhev Kumar Manakkat Vijay, Ming Zhou, Kairavee Thakkar, Abigail Rothrauff, Amanpreet Singh Chawla, Alok Joglekar

Res Sq· September 2023

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Dietary tryptophan metabolite released by intratumoral Lactobacillus reuteri facilitates immune checkpoint inhibitor treatment.
Mackenzie J Bender, Alex C McPherson, Catherine M Phelps, Surya P Pandey, Colin R Laughlin, Alok V Joglekar

Cell· April 2023

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People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden.
Anthony R Cillo, Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J Workman, Alok V Joglekar

Cell Rep Med· December 2021

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T cell antigen discovery.
Alok V Joglekar, Guideng Li

Nat Methods· August 2021

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Bifurcated monocyte states are predictive of mortality in severe COVID-19.
Anthony R Cillo, Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J Workman, Alok V Joglekar

bioRxiv· February 2021

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Alternative splicing coupled with transcript degradation modulates OAS1g antiviral activity.
Luke Frankiw, Mati Mann, Guideng Li, Alok Joglekar, David Baltimore

RNA· February 2020

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T cell antigen discovery via signaling and antigen-presenting bifunctional receptors.
Alok V Joglekar, Michael T Leonard, John D Jeppson, Margaret Swift, Guideng Li

Nat Methods· February 2019

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T cell antigen discovery via trogocytosis.
Guideng Li, Michael T Bethune, Stephanie Wong, Alok V Joglekar, Michael T Leonard

Nat Methods· February 2019

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Site-Specific Gene Editing of Human Hematopoietic Stem Cells for X-Linked Hyper-IgM Syndrome.
Caroline Y Kuo, Joseph D Long, Beatriz Campo-Fernandez, Satiro de Oliveira, Aaron R Cooper, Alok V Joglekar

Cell Rep· May 2018

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T cell receptors for the HIV KK10 epitope from patients with differential immunologic control are functionally indistinguishable.
Alok V Joglekar, Zhe Liu, Jeffrey K Weber, Yong Ouyang, John D Jeppson

Proc Natl Acad Sci U S A· February 2018

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Personalized T cell-mediated cancer immunotherapy: progress and challenges.
Michael T Bethune, Alok V Joglekar

Curr Opin Biotechnol· December 2017

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Pseudotyped Lentiviral Vectors: One Vector, Many Guises.
Alok V Joglekar, Salemiz Sandoval

Hum Gene Ther Methods· December 2017

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