Publications by authors named "Andre Faure"

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Deep indel mutagenesis reveals the regulatory and modulatory architecture of alternative exon splicing.
Pablo Baeza-Centurión, Belén Miñana, Andre J Faure, Mike Thompson, Sophie Bonnal

Nat Commun· August 2025

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Genetics, energetics, and allostery in proteins with randomized cores and surfaces.
Albert Escobedo, Gesa Voigt, Andre J Faure, Ben Lehner

Science· July 2025

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Massively parallel genetic perturbation suggests the energetic structure of an amyloid-β transition state.
Anna Arutyunyan, Mireia Seuma, Andre J Faure, Benedetta Bolognesi, Ben Lehner

Sci Adv· June 2025

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Massively parallel genetic perturbation reveals the energetic architecture of an amyloid beta nucleation reaction.
Anna Arutyunyan, Mireia Seuma, Andre J Faure, Benedetta Bolognesi, Ben Lehner

bioRxiv· December 2024

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MoCHI: neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational scanning data.
Andre J Faure, Ben Lehner

Genome Biol· December 2024

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The genetic architecture of protein stability.
Andre J Faure, Aina Martí-Aranda, Cristina Hidalgo-Carcedo, Antoni Beltran, Jörn M Schmiedel

Nature· October 2024

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The genetic architecture of protein interaction affinity and specificity.
Alexandra M Bendel, Andre J Faure, Dominique Klein, Kenji Shimada, Romane Lyautey

Nat Commun· October 2024

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An extension of the Walsh-Hadamard transform to calculate and model epistasis in genetic landscapes of arbitrary shape and complexity.
Andre J Faure, Ben Lehner, Verónica Miró Pina, Claudia Serrano Colome, Donate Weghorn

PLoS Comput Biol· May 2024

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The energetic and allosteric landscape for KRAS inhibition.
Chenchun Weng, Andre J Faure, Albert Escobedo, Ben Lehner

Nature· February 2024

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Mapping the energetic and allosteric landscapes of protein binding domains.
Andre J Faure, Júlia Domingo, Jörn M Schmiedel, Cristina Hidalgo-Carcedo, Guillaume Diss

Nature· April 2022

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The genetic landscape for amyloid beta fibril nucleation accurately discriminates familial Alzheimer's disease mutations.
Mireia Seuma, Andre J Faure, Marta Badia, Ben Lehner, Benedetta Bolognesi

Elife· February 2021

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Fitness landscape of a dynamic RNA structure.
Valerie W C Soo, Jacob B Swadling, Andre J Faure, Tobias Warnecke

PLoS Genet· February 2021

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DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies.
Andre J Faure, Jörn M Schmiedel, Pablo Baeza-Centurion, Ben Lehner

Genome Biol· August 2020

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The mutational landscape of a prion-like domain.
Benedetta Bolognesi, Andre J Faure, Mireia Seuma, Jörn M Schmiedel, Gian Gaetano Tartaglia

Nat Commun· September 2019

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Systematic Analysis of the Determinants of Gene Expression Noise in Embryonic Stem Cells.
Andre J Faure, Jörn M Schmiedel, Ben Lehner

Cell Syst· November 2017

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3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Andre J Faure

Nature· April 2017

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Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin.
Elizabeth Ing-Simmons, Vlad C Seitan, Andre J Faure, Paul Flicek, Thomas Carroll

Genome Res· April 2015

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Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways.
Benoit Ballester, Alejandra Medina-Rivera, Dominic Schmidt, Mar Gonzàlez-Porta, Matthew Carlucci, Andre J Faure

Elife· October 2014

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.
Vlad C Seitan, Andre J Faure, Ye Zhan, Rachel Patton McCord, Bryan R Lajoie

Genome Res· December 2013

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Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes.
Petra C Schwalie, Michelle C Ward, Carolyn E Cain, Andre J Faure, Yoav Gilad

Genome Biol· December 2013

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Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules.
Andre J Faure, Dominic Schmidt, Stephen Watt, Petra C Schwalie, Michael D Wilson

Genome Res· November 2012

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Investigating the effect of paralogs on microarray gene-set analysis.
Andre J Faure, Cathal Seoighe, Nicola J Mulder

BMC Bioinformatics· January 2011

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Ablation of bull prostate using novel bipolar radiofrequency ablation probe.
Lee Richstone, Matt Ziegelbaum, Zeph Okeke, Andre Faure, Jonathan D Kaye

J Endourol· January 2009

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Enhanced individual selection for selecting fast growing fish: the "PROSPER" method, with application on brown trout (Salmo trutta fario).
Bernard Chevassus, Edwige Quillet, Francine Krieg, Marie-Gwénola Hollebecq, Muriel Mambrini

Genet Sel Evol· March 2005

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