Publications by authors named "Andrea Tyler"

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Complete genome sequences of two subsp. specimens from Canadian patients.
Nishant Singh, Thomas W A Braukmann, MacKenzie Neale, George S Long, Derek Stein, Andrea Tyler

Microbiol Resour Announc· October 2025

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Sporadic detection of vaccine-derived poliovirus type 2 using next-generation sequencing in Canadian wastewater in August of 2022.
Grace E Seo, Russell Mandes, Nathan D Wright, Justin P Hawkins, Anneliese Landgraff, Andrea D Tyler

Sci Rep· April 2025

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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Andrea D Tyler

Microb Genom· October 2024

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Responding to and managing multijurisdictional outbreaks of COVID-19 in Canadian industrial worksite/work camp settings.
Erin McGill, Anna Bellos, Andrea Nwosu, Adrian Zetner, Andrea Tyler

Can J Public Health· June 2024

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The Canadian VirusSeq Data Portal & Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology.
Erin E Gill, Baofeng Jia, Carmen Lia Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Andrea D Tyler

ArXiv· May 2024

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Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Ruth E Timme, Ilene Karsch-Mizrachi, Zahra Waheed, Masanori Arita, Duncan MacCannell, Andrea D Tyler

Microb Genom· December 2023

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Field-based detection of bacteria using nanopore sequencing: Method evaluation for biothreat detection in complex samples.
Andrea D Tyler, Jane McAllister, Helen Stapleton, Penny Gauci, Kym Antonation

PLoS One· November 2023

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Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach.
Jillian Rumore, Matthew Walker, Franco Pagotto, Jessica D Forbes, Christy-Lynn Peterson, Andrea D Tyler

BMC Genomics· June 2023

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The DataHarmonizer: a tool for faster data harmonization, validation, aggregation and analysis of pathogen genomics contextual information.
Ivan S Gill, Emma J Griffiths, Damion Dooley, Rhiannon Cameron, Sarah Savić Kallesøe, Andrea Tyler

Microb Genom· January 2023

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Ceftaroline Pharmacokinetics in a Critically Ill Adult Receiving Continuous Venovenous Hemodiafiltration.
Alexander R Cain, Lauren M Finoli, Anthony Guarascio, Osakpolor Ogbebor, Nathan R Shively, Tyler Andrea

Ann Pharmacother· August 2022

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Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data.
Julie Chih-Yu Chen, Andrea D Tyler

Biol Direct· December 2020

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Mucosa-Associated Microbiota in Ileoanal Pouches May Contribute to Clinical Symptoms, Particularly Stool Frequency, Independent of Endoscopic Disease Activity.
Williams Turpin, Orlaith Kelly, Krzysztof Borowski, Karen Boland, Andrea Tyler

Clin Transl Gastroenterol· May 2019

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Evaluation of Oxford Nanopore's MinION Sequencing Device for Microbial Whole Genome Sequencing Applications.
Andrea D Tyler, Laura Mataseje, Chantel J Urfano, Lisa Schmidt, Kym S Antonation

Sci Rep· July 2018

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Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada.
Andrea D Tyler, Elaine Randell, Maureen Baikie, Kym Antonation, Debra Janella

PLoS One· October 2017

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Time-to-Detection of Inducible Macrolide Resistance in Mycobacterium abscessus Subspecies and Its Association with the Erm(41) Sequevar.
Sara Christianson, William Grierson, Daniel Kein, Andrea D Tyler, Joyce Wolfe

PLoS One· August 2017

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Custom database development and biomarker discovery methods for MALDI-TOF mass spectrometry-based identification of high-consequence bacterial pathogens.
Dobryan M Tracz, Andrea D Tyler, Ian Cunningham, Kym S Antonation, Cindi R Corbett

J Microbiol Methods· March 2017

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A Study of the Infant Nasal Microbiome Development over the First Year of Life and in Relation to Their Primary Adult Caregivers Using cpn60 Universal Target (UT) as a Phylogenetic Marker.
Shelley W Peterson, Natalie C Knox, George R Golding, Shaun D Tyler, Andrea D Tyler

PLoS One· August 2016

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Intraepithelial lymphocytosis is a frequent finding in biopsies from ileal pouch-anal anastomoses.
David F Schaeffer, Joanna C Walsh, Andrea D Tyler, Ofer Ben-Bassat, Mark S Silverberg

Hum Pathol· August 2016

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Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis.
Andrea D Tyler, Sara Christianson, Natalie C Knox, Philip Mabon, Joyce Wolfe

PLoS One· July 2016

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Infliximab to Treat Refractory Inflammation After Pelvic Pouch Surgery for Ulcerative Colitis.
Orlaith B Kelly, Morgan Rosenberg, Andrea D Tyler, Joanne M Stempak, A Hillary Steinhart

J Crohns Colitis· April 2016

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Microbiome Heterogeneity Characterizing Intestinal Tissue and Inflammatory Bowel Disease Phenotype.
Andrea D Tyler, Richard Kirsch, Raquel Milgrom, Joanne M Stempak, Boyko Kabakchiev

Inflamm Bowel Dis· April 2016

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Genetics and innate and adaptive immunity in IBD.
Galliano Zanello, David Kevans, Ashleigh Goethel, Mark Silverberg, Andrea Tyler

Nestle Nutr Inst Workshop Ser· May 2015

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Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease.
Xochitl C Morgan, Boyko Kabakchiev, Levi Waldron, Andrea D Tyler, Timothy L Tickle

Genome Biol· April 2015

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Complex host genetics influence the microbiome in inflammatory bowel disease.
Dan Knights, Mark S Silverberg, Rinse K Weersma, Dirk Gevers, Gerard Dijkstra, Andrea D Tyler

Genome Med· January 2015

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Microbiome analysis - from technical advances to biological relevance.
Michelle I Smith, Williams Turpin, Andrea D Tyler, Mark S Silverberg, Kenneth Croitoru

F1000Prime Rep· September 2014

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