Publications by authors named "Andreotti Sandro"

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Characterizing mixed strongyle infections in foals and broodmares using cytochrome c oxidase subunit I deep amplicon sequencing.
Luise Grace Klass, Jürgen Krücken, Susan Mbedi, Sarah Sparmann, Thore Schenk, Sandro Andreotti

Parasit Vectors· January 2026

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Cytochrome c oxidase I deep amplicon sequencing for metabarcoding of equine strongyle communities: unexpectedly high Strongylus spp. prevalence in treated horses.
Jürgen Krücken, Irina Diekmann, Sandro Andreotti, Christina M Bredtmann, Susan Mbedi

Int J Parasitol· October 2025

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Species diversity and within-host tropism for mixed equine strongyle infections using a cytochrome c oxidase subunit I metabarcoding approach.
Luise Grace Klass, Irina Diekmann, Sandro Andreotti, Susan Mbedi, Sarah Sparmann

Int J Parasitol· October 2025

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Strong correlation of gene counts and differentially expressed genes between a 3' RNA-Seq and an RNA hybridization platform in transcriptome analyses from canine archival tissues.
Alexander F H Haake, Alina K Loriani Fard, Vladimir M Jovanovic, Sandro Andreotti, Achim D Gruber

Front Vet Sci· June 2025

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Fully Phased Population-Prevalent East African Cattle BoLA-I Alleles Determined Using PacBio HiFi Long-Read Sequencing Represent Five Novel Specificities With Distinctive Peptide Binding Potential.
Isaiah Obara, Andreotti Sandro, Khawla Elati, Timothy Conneley, Morten Nielsen

HLA· April 2025

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Immuno-oncologic profiling by stage-dependent transcriptome and proteome analyses of spontaneously regressing canine cutaneous histiocytoma.
Alina K Loriani Fard, Alexander Haake, Vladimir Jovanovic, Sandro Andreotti, Michael Hummel

PeerJ· December 2024

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Differences in constitutive gene expression of cytochrome P450 enzymes and ATP-binding cassette transporter gene expression between a susceptible and a highly macrocyclic lactone-resistant Haemonchus contortus isolate in the absence of drug-inducible expression.
Natalie Jakobs, Sandro Andreotti, Sabrina Ramünke, Georg von Samson-Himmelstjerna, Jürgen Krücken

Parasit Vectors· December 2024

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Identification of Universally Applicable and Species-Specific Marker Peptides for .
Natalie Witt, Domenico Galante, Sandro Andreotti, Mostafa Abdel Glil, Antonio Fasanella

Life (Basel)· October 2022

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De Novo-Whole Genome Assembly of the Roborovski Dwarf Hamster (Phodopus roborovskii) Genome: An Animal Model for Severe/Critical COVID-19.
Sandro Andreotti, Janine Altmüller, Claudia Quedenau, Tatiana Borodina, Geraldine Nouailles

Genome Biol Evol· July 2022

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Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics.
Emanuel Wyler, Julia M Adler, Kathrin Eschke, G Teixeira Alves, Stefan Peidli, Sandro Andreotti

Mol Ther· May 2022

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Temporal omics analysis in Syrian hamsters unravel cellular effector responses to moderate COVID-19.
Geraldine Nouailles, Emanuel Wyler, Peter Pennitz, Dylan Postmus, Daria Vladimirova, Sandro Andreotti

Nat Commun· August 2021

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Equine Herpesvirus Type 4 (EHV-4) Outbreak in Germany: Virological, Serological, and Molecular Investigations.
Selvaraj Pavulraj, Kathrin Eschke, Jana Theisen, Stephanie Westhoff, Gitta Reimers, Sandro Andreotti

Pathogens· June 2021

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SCORE: Smart Consensus Of RNA Expression-a consensus tool for detecting differentially expressed genes in bacteria.
Silver A Wolf, Lennard Epping, Sandro Andreotti, Knut Reinert, Torsten Semmler

Bioinformatics· April 2021

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Rapid and Culture Free Identification of in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping.
Natalie Witt, Sandro Andreotti, Anne Busch, Kerstin Neubert, Knut Reinert

Front Microbiol· May 2020

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Fatal Elephant Endotheliotropic Herpesvirus Infection of Two Young Asian Elephants.
Selvaraj Pavulraj, Kathrin Eschke, Adriane Prahl, Michael Flügger, Jakob Trimpert, Sandro Andreotti

Microorganisms· September 2019

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Guided Reconstruction of Full-Length Isoforms from Short Reads by CIDANE.
Sandro Andreotti, Stefan Canzar

Methods Mol Biol· May 2019

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High-performance liquid chromatography with electrospray ionization ion mobility spectrometry: Characterization, data management, and applications.
Martin Zühlke, Daniel Riebe, Toralf Beitz, Hans-Gerd Löhmannsröben, Sandro Andreotti

J Sep Sci· December 2016

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OpenMS: a flexible open-source software platform for mass spectrometry data analysis.
Hannes L Röst, Timo Sachsenberg, Stephan Aiche, Chris Bielow, Hendrik Weisser, Sandro Andreotti

Nat Methods· August 2016

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CIDANE: comprehensive isoform discovery and abundance estimation.
Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W Klau

Genome Biol· January 2016

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Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem.
Sandro Andreotti, Gunnar W Klau, Knut Reinert

IEEE/ACM Trans Comput Biol Bioinform· May 2014

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The duplication-loss small phylogeny problem: from cherries to trees.
Sandro Andreotti, Knut Reinert, Stefan Canzar

J Comput Biol· September 2013

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MSSimulator: Simulation of mass spectrometry data.
Chris Bielow, Stephan Aiche, Sandro Andreotti, Knut Reinert

J Proteome Res· July 2011

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