Publications by authors named "Andrew D Cherniack"

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MYC amplification and MYC protein expression are poor prognostic markers in pediatric and young adult osteosarcoma.
Matthew R Nagy, Olivia Puopolo, Erin Alston, Sreekar Challa, Evelina Ceca, Andrew D Cherniack

Cancer· November 2025

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Sevabertinib, a Reversible HER2 Inhibitor with Activity in Lung Cancer.
Franziska Siegel, Stephan Siegel, Kristýna Kotýnková, Gizem Karsli Uzunbas, Daniel Korr, Andrew D Cherniack

Cancer Discov· October 2025

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Clinicogenomic Characterization of Inflammatory Breast Cancer.
Nolan Priedigkeit, Beth Harrison, Robert Shue, Melissa E Hughes, Yvonne Li, Andrew D Cherniack

Clin Cancer Res· July 2025

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Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
Bhavneet Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E Chiotti, Andrew D Cherniack

Sci Rep· July 2025

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Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
Bahar Tercan, Victor H Apolonio, Vinicius S Chagas, Christopher K Wong, Jordan A Lee, Andrew D Cherniack

STAR Protoc· June 2025

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Protocol for obtaining cancer type and subtype predictions using subSCOPE.
Jasleen K Grewal, A Gordon Robertson, Kyle Ellrott, Christopher K Wong, Jordan A Lee, Andrew D Cherniack

STAR Protoc· June 2025

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Three-dimensional genome landscape of primary human cancers.
Kathryn E Yost, Yanding Zhao, King L Hung, Kaiyuan Zhu, Duo Xu, Andrew D Cherniack

Nat Genet· May 2025

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Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
Kyle Ellrott, Christopher K Wong, Christina Yau, Mauro A A Castro, Jordan A Lee, Andrew D Cherniack

Cancer Cell· February 2025

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Contemporary prognostic signatures and refined risk stratification of gliomas: An analysis of 4400 tumors.
Hia S Ghosh, Ruchit V Patel, Eleanor Woodward, Noah F Greenwald, Varun M Bhave, Andrew D Cherniack

Neuro Oncol· January 2025

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A Phase I Trial of Trebananib, an Angiopoietin 1 and 2 Neutralizing Peptibody, Combined with Pembrolizumab in Patients with Advanced Ovarian and Colorectal Cancer.
Brandon M Huffman, Osama E Rahma, Kevin Tyan, Yvonne Y Li, Anita Giobbie-Hurder, Andrew D Cherniack

Cancer Immunol Res· January 2025

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Author Correction: Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer.
Suzanne J Forrest, Hersh Gupta, Abigail Ward, Yvonne Y Li, Duong Doan, Andrew D Cherniack

Nat Commun· August 2024

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Molecular profiling of 888 pediatric tumors informs future precision trials and data-sharing initiatives in pediatric cancer.
Suzanne J Forrest, Hersh Gupta, Abigail Ward, Yvonne Y Li, Duong Doan, Andrew D Cherniack

Nat Commun· July 2024

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Velcrin molecular glues induce apoptosis in glioblastomas with high and expression.
Elisa Aquilanti, Silvia Goldoni, Andrew Baker, Kristyna Kotynkova, Sawyer Andersen, Andrew D Cherniack

Neurooncol Adv· July 2024

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Genomic and Immunophenotypic Landscape of Acquired Resistance to PD-(L)1 Blockade in Non-Small-Cell Lung Cancer.
Biagio Ricciuti, Giuseppe Lamberti, Sreekar R Puchala, Navin R Mahadevan, Jia-Ren Lin, Andrew D Cherniack

J Clin Oncol· April 2024

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RAS/RAF Comutation and ERBB2 Copy Number Modulates HER2 Heterogeneity and Responsiveness to HER2-directed Therapy in Colorectal Cancer.
Harshabad Singh, Pranshu Sahgal, Kevin Kapner, Steven M Corsello, Hersh Gupta, Andrew D Cherniack

Clin Cancer Res· April 2024

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Author Correction: Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants.
Tikvah K Hayes, Elisa Aquilanti, Nicole S Persky, Xiaoping Yang, Erica E Kim, Andrew D Cherniack

Nat Commun· April 2024

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Comprehensive mutational scanning of EGFR reveals TKI sensitivities of extracellular domain mutants.
Tikvah K Hayes, Elisa Aquilanti, Nicole S Persky, Xiaoping Yang, Erica E Kim, Andrew D Cherniack

Nat Commun· March 2024

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XRN1 deletion induces PKR-dependent cell lethality in interferon-activated cancer cells.
Tao Zou, Meng Zhou, Akansha Gupta, Patrick Zhuang, Alyssa R Fishbein, Andrew D Cherniack

Cell Rep· February 2024

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XRN1 deletion induces PKR-dependent cell lethality in interferon-activated cancer cells.
Tao Zou, Meng Zhou, Akansha Gupta, Patrick Zhuang, Alyssa R Fishbein, Andrew D Cherniack

Cell Rep· February 2024

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Author Correction: Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.
Paolo Tarantino, Hersh Gupta, Melissa E Hughes, Janet Files, Sarah Strauss, Andrew D Cherniack

Nat Commun· December 2023

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Oncogenic Drivers and Therapeutic Vulnerabilities in KRAS Wild-Type Pancreatic Cancer.
Harshabad Singh, Rachel B Keller, Kevin S Kapner, Julien Dilly, Srivatsan Raghavan, Andrew D Cherniack

Clin Cancer Res· November 2023

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Loss of heterozygosity does not occur in BRCA1/2 mutant pediatric solid and central nervous system tumors.
Andrew Groves, Abigail Ward, Yvonne Y Li, Lorena Lazo de la Vega, Anwesha Nag, Andrew D Cherniack

Pediatr Blood Cancer· November 2023

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Comprehensive genomic characterization of HER2-low and HER2-0 breast cancer.
Paolo Tarantino, Hersh Gupta, Melissa E Hughes, Janet Files, Sarah Strauss, Andrew D Cherniack

Nat Commun· November 2023

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deletion induces PKR-dependent cell lethality in interferon-activated cancer cells.
Tao Zou, Meng Zhou, Akansha Gupta, Patrick Zhuang, Alyssa R Fishbein, Andrew D Cherniack

bioRxiv· August 2023

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Cancer aneuploidies are shaped primarily by effects on tumour fitness.
Juliann Shih, Shahab Sarmashghi, Nadja Zhakula-Kostadinova, Shu Zhang, Yohanna Georgis, Andrew D Cherniack

Nature· July 2023

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