Publications by authors named "Andrew D Ellington"

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Engineering and Assay of Enzymes for Expanded Genetic Alphabet Replication.
Sanchita Bhadra, Sandy T Nguyen, Andrew D Ellington

Biochemistry· December 2025

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Acid Hydrolyzed Nylon-6 Turbidity as a Novel, Efficient, and Adaptable Assay for Nylonase Activity.
Isa Madrigal Harrison, Daniel J Acosta, Phuoc H T Ngo, Chandler K Wells, Cole A Williams, Andrew D Ellington

ACS Synth Biol· December 2025

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Correction: Room temperature CRISPR diagnostics for low-resource settings.
Eric A Nalefski, Selma Sinan, Jason L Cantera, Anastasia G Kim, Remy M Kooistra, Andrew D Ellington

Sci Rep· November 2025

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LDBT instead of DBTL: combining machine learning and rapid cell-free testing.
Alia Clark-ElSayed, Isa Madrigal Harrison, Meagan L Olsen, John T Lazar, Michael C Jewett, Andrew D Ellington

Nat Commun· November 2025

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Directed Evolution in Escherichia coli for Novel Ligand-Binding Regulators: Evolving a Progesterone-Responsive Transcription Factor to Bind Cortisol.
Alia Clark-ElSayed, Kaila E Nayvelt, Satoshi Ishida, Simon d'Oelsnitz, Andrew D Ellington

Curr Protoc· October 2025

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A Compositionally Biased Oligourethane Sensor Array To Differentiate Solids by Their Surface Chemistry: An Analogy to the Sense of Touch.
Hazel A Fargher, Jongdoo Lim, Julia R Shuluk, Christopher D Wight, Silke Asche, Andrew D Ellington

J Am Chem Soc· August 2025

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Moving towards sequencing-based metabolomics.
Alia Clark-ElSayed, Andrew D Ellington, Edward M Marcotte

Trends Genet· July 2025

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Directed Evolution of a SelB Variant that Does Not Require a Selenocysteine Insertion Sequence Element for Function.
Satoshi Ishida, Arno Gundlach, Clayton W Kosonocky, Andrew D Ellington

ACS Synth Biol· July 2025

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Directed evolution of L-DOPA sensing and production enables efficient incorporation of an expanded genetic code into proteins.
Andrew R Gilmour, Qiyao Wei, Chad Wang, Jessica Hellinger, Vidya Pandarinath, Andrew D Ellington

bioRxiv· June 2025

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Design Principles for Polymerase Strand Recycling Circuits.
Yueyi Li, Arno E Gundlach, Andrew D Ellington, Julius B Lucks

bioRxiv· March 2025

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Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes.
Shaunak Kar, Elizabeth C Gardner, Kamyab Javanmardi, Daniel R Boutz, Raghav Shroff, Andrew D Ellington

iScience· January 2025

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Room temperature CRISPR diagnostics for low-resource settings.
Eric A Nalefski, Selma Sinan, Jason L Cantera, Anastasia G Kim, Remy M Kooistra, Andrew D Ellington

Sci Rep· January 2025

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Plastic degradation by enzymes from uncultured deep sea microorganisms.
Daniel J Acosta, Daryl R Barth, Julie Bondy, Kathryn E Appler, Valerie De Anda, Andrew D Ellington

ISME J· January 2025

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Supercharged fluorescent proteins detect lanthanides via direct antennae signaling.
Kevin Y Huang, Lizette Cardenas, Andrew D Ellington, David J F Walker

Nat Commun· October 2024

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Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes.
Shaunak Kar, Elizabeth C Gardner, Kamyab Javanmardi, Daniel R Boutz, Raghav Shroff, Andrew D Ellington

bioRxiv· September 2024

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Ligify: Automated Genome Mining for Ligand-Inducible Transcription Factors.
Simon d'Oelsnitz, Joshua D Love, Andrew D Ellington, David Ross

ACS Synth Biol· August 2024

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Stability Oracle: a structure-based graph-transformer framework for identifying stabilizing mutations.
Daniel J Diaz, Chengyue Gong, Jeffrey Ouyang-Zhang, James M Loy, Jordan Wells, Andrew D Ellington

Nat Commun· July 2024

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Mining patents with large language models elucidates the chemical function landscape.
Clayton W Kosonocky, Claus O Wilke, Edward M Marcotte, Andrew D Ellington

Digit Discov· June 2024

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Engineering a human P2X2 receptor with altered ligand selectivity in yeast.
Elizabeth C Gardner, Caitlin Tramont, Petra Bachanová, Chad Wang, Hannah Do, Andrew D Ellington

J Biol Chem· May 2024

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A Humanized CB1R Yeast Biosensor Enables Facile Screening of Cannabinoid Compounds.
Colleen J Mulvihill, Joshua D Lutgens, Jimmy D Gollihar, Petra Bachanová, Caitlin Tramont, Andrew D Ellington

Int J Mol Sci· May 2024

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Asymmetric Synthesis of α-Chloroamides via Photoenzymatic Hydroalkylation of Olefins.
Yi Liu, Sophie G Bender, Damien Sorigue, Daniel J Diaz, Andrew D Ellington

J Am Chem Soc· March 2024

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Biosensor and machine learning-aided engineering of an amaryllidaceae enzyme.
Simon d'Oelsnitz, Daniel J Diaz, Wantae Kim, Daniel J Acosta, Tyler L Dangerfield, Andrew D Ellington

Nat Commun· March 2024

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Snowprint: a predictive tool for genetic biosensor discovery.
Simon d'Oelsnitz, Sarah K Stofel, Joshua D Love, Andrew D Ellington

Commun Biol· February 2024

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Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches.
Clayton W Kosonocky, Aaron L Feller, Claus O Wilke, Andrew D Ellington

Patterns (N Y)· December 2023

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Mining Patents with Large Language Models Elucidates the Chemical Function Landscape.
Clayton W Kosonocky, Claus O Wilke, Edward M Marcotte, Andrew D Ellington

ArXiv· December 2023

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