Publications by authors named "Raghav Shroff"

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Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes.
Shaunak Kar, Elizabeth C Gardner, Kamyab Javanmardi, Daniel R Boutz, Raghav Shroff

iScience· January 2025

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Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes.
Shaunak Kar, Elizabeth C Gardner, Kamyab Javanmardi, Daniel R Boutz, Raghav Shroff

bioRxiv· September 2024

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SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode.
Jule Goike, Ching-Lin Hsieh, Andrew P Horton, Elizabeth C Gardner, Ling Zhou, Raghav Shroff

Commun Biol· December 2023

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Improved Bst DNA Polymerase Variants Derived a Machine Learning Approach.
Inyup Paik, Phuoc H T Ngo, Raghav Shroff, Daniel J Diaz, Andre C Maranhao

Biochemistry· January 2023

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DLPacker: Deep learning for prediction of amino acid side chain conformations in proteins.
Mikita Misiura, Raghav Shroff, Ross Thyer, Anatoly B Kolomeisky

Proteins· June 2022

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Machine learning-aided engineering of hydrolases for PET depolymerization.
Hongyuan Lu, Daniel J Diaz, Natalie J Czarnecki, Congzhi Zhu, Wantae Kim, Raghav Shroff

Nature· April 2022

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Recovery of Information Stored in Modified DNA with an Evolved Polymerase.
Raghav Shroff, Jared W Ellefson, Siyuan S Wang, Alexander A Boulgakov, Randall A Hughes

ACS Synth Biol· February 2022

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Discovery of Novel Gain-of-Function Mutations Guided by Structure-Based Deep Learning.
Raghav Shroff, Austin W Cole, Daniel J Diaz, Barrett R Morrow, Isaac Donnell

ACS Synth Biol· November 2020

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Cellular reagents for diagnostics and synthetic biology.
Sanchita Bhadra, Arti Pothukuchy, Raghav Shroff, Austin W Cole, Michelle Byrom

PLoS One· February 2019

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Evolution of a Thermophilic Strand-Displacing Polymerase Using High-Temperature Isothermal Compartmentalized Self-Replication.
John N Milligan, Raghav Shroff, Daniel J Garry, Andrew D Ellington

Biochemistry· August 2018

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Custom selenoprotein production enabled by laboratory evolution of recoded bacterial strains.
Ross Thyer, Raghav Shroff, Dustin R Klein, Simon d'Oelsnitz, Victoria C Cotham

Nat Biotechnol· August 2018

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Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis.
Emily M Nowicki, Raghav Shroff, Jacqueline A Singleton, Diane E Renaud, Debra Wallace

mBio· April 2018

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Evolving Bacterial Fitness with an Expanded Genetic Code.
Drew S Tack, Austin C Cole, Raghav Shroff, Barrett R Morrow, Andrew D Ellington

Sci Rep· February 2018

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Synthetic evolutionary origin of a proofreading reverse transcriptase.
Jared W Ellefson, Jimmy Gollihar, Raghav Shroff, Haridha Shivram, Vishwanath R Iyer

Science· June 2016

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Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals.
Evan J Olson, Lucas A Hartsough, Brian P Landry, Raghav Shroff, Jeffrey J Tabor

Nat Methods· April 2014

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Fragile X AGG analysis provides new risk predictions for 45-69 repeat alleles.
Sarah L Nolin, Sachin Sah, Anne Glicksman, Stephanie L Sherman, Emily Allen, Raghav Shroff

Am J Med Genet A· April 2013

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