Publications by authors named "Andrew D Holmes"

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Epididymal dynamics and preimplantation roles of a sperm-enriched 5' fragment of tRNA-valine.
Simeiyun Liu, Andrew D Holmes, Alka Gupta, Sol Katzman, Upasna Sharma

Cell Rep· October 2025

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A survey of dietary effects on tRNA abundance and modifications.
Simeiyun Liu, Andrew D Holmes, Ruoxia Zhao, Cassandra Herbert, Patrick A Limbach

bioRxiv· June 2025

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Analyzing, visualizing, and annotating tRNA-derived RNAs using tRAX and tDRnamer.
Patricia P Chan, Andrew D Holmes, Todd M Lowe

Methods Enzymol· May 2025

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Epididymis-specific RNase A family genes regulate fertility and small RNA processing.
Joshua F Shaffer, Alka Gupta, Geetika Kharkwal, Edgardo E Linares, Andrew D Holmes

J Biol Chem· December 2024

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A sperm-enriched 5'fragment of tRNA-Valine regulates preimplantation embryonic transcriptome and development.
Simeiyun Liu, Andrew D Holmes, Sol Katzman, Upasna Sharma

bioRxiv· August 2024

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Epididymis-specific RNase A family genes regulate fertility and small RNA processing.
Joshua F Shaffer, Alka Gupta, Geetika Kharkwal, Edgardo E Linares, Andrew D Holmes

bioRxiv· August 2024

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A standardized ontology for naming tRNA-derived RNAs based on molecular origin.
Andrew D Holmes, Patricia P Chan, Qi Chen, Pavel Ivanov, Laurence Drouard

Nat Methods· May 2023

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Sex-split analysis of pathology and motor-behavioral outcomes in a mouse model of CLN8-Batten disease reveals an increased disease burden and trajectory in female Cln8 mice.
Andrew D Holmes, Katherine A White, Melissa A Pratt, Tyler B Johnson, Shibi Likhite

Orphanet J Rare Dis· November 2022

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Predicting transfer RNA gene activity from sequence and genome context.
Bryan P Thornlow, Joel Armstrong, Andrew D Holmes, Jonathan M Howard, Russell B Corbett-Detig

Genome Res· January 2020

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Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations.
Wei Qin, Shady A Amin, Rachel A Lundeen, Katherine R Heal, Willm Martens-Habbena, Andrew D Holmes

ISME J· February 2018

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ARM-seq: AlkB-facilitated RNA methylation sequencing reveals a complex landscape of modified tRNA fragments.
Aaron E Cozen, Erin Quartley, Andrew D Holmes, Eva Hrabeta-Robinson, Eric M Phizicky

Nat Methods· September 2015

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The UCSC Archaeal Genome Browser: 2012 update.
Patricia P Chan, Andrew D Holmes, Andrew M Smith, Danny Tran, Todd M Lowe

Nucleic Acids Res· January 2012

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In-vitro kinematic testing of porcine cervical spine: a rotational manipulation model.
Jim M W Ngan, Daniel H K Chow, Andrew D Holmes, Malcolm H Pope, Alon Lai

Prosthet Orthot Int· March 2009

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Impaired dynamic balance control in adolescents with idiopathic scoliosis and abnormal somatosensory evoked potentials.
Miko L M Lao, Daniel H K Chow, Xia Guo, Jack C Y Cheng, Andrew D Holmes

J Pediatr Orthop· December 2008

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Reliability of radiographic intervertebral disc height measurement for in vivo rat-tail model.
Alon Lai, Daniel H K Chow, W S Siu, Andrew D Holmes, F H Tang

Med Eng Phys· September 2007

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The effects of load carriage and bracing on the balance of schoolgirls with adolescent idiopathic scoliosis.
Daniel H K Chow, Dawn S S Leung, Andrew D Holmes

Eur Spine J· September 2007

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The effect of backpack weight on the standing posture and balance of schoolgirls with adolescent idiopathic scoliosis and normal controls.
Daniel H K Chow, Monica L Y Kwok, Jack C Y Cheng, Miko L M Lao, Andrew D Holmes

Gait Posture· October 2006

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The effect of prosthesis alignment on the symmetry of gait in subjects with unilateral transtibial amputation.
Daniel H K Chow, Andrew D Holmes, Christina K L Lee, S W Sin

Prosthet Orthot Int· August 2006

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The effect of load carriage on the gait of girls with adolescent idiopathic scoliosis and normal controls.
Daniel H K Chow, Monica L Y Kwok, Alexander C K Au-Yang, Andrew D Holmes, Jack C Y Cheng

Med Eng Phys· June 2006

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Effects of backpack loading on the pulmonary capacities of normal schoolgirls and those with adolescent idiopathic scoliosis.
Daniel H K Chow, Xavier H Y Ng, Andrew D Holmes, Jack C Y Cheng, Fiona Y D Yao

Spine (Phila Pa 1976)· November 2005

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The kinematics and intra- and inter-therapist consistencies of lower cervical rotational manipulation.
Jim M W Ngan, Daniel H K Chow, Andrew D Holmes

Med Eng Phys· June 2005

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Postural perturbation and muscular response following sudden release during symmetric squat and stoop lifting.
Daniel H K Chow, Irene Y W Cheng, Andrew D Holmes, John H Evans

Ergonomics· May 2005

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The effect of backpack load on the gait of normal adolescent girls.
Daniel H K Chow, Monica L Y Kwok, Alexander C K Au-Yang, Andrew D Holmes, Jack C Y Cheng

Ergonomics· May 2005

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Pure shear properties of lumbar spinal joints and the effect of tissue sectioning on load sharing.
William W Lu, Keith D K Luk, Andrew D Holmes, Ken M C Cheung, John C Y Leong

Spine (Phila Pa 1976)· April 2005

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Muscular and centre of pressure response to sudden release of load in symmetric and asymmetric stoop lifting tasks.
Daniel H K Chow, Irene Y W Cheng, Andrew D Holmes, John H Evans

Appl Ergon· January 2005

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