Publications by authors named "Angela DePace"

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E
Emergence of activation or repression in transcriptional control under a fixed molecular context.
Rosa Martinez-Corral, Dhana Friedrich, Robert Frömel, Lars Velten, Jeremy Gunawardena, Angela H DePace

Proc Natl Acad Sci U S A· September 2025

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Emergence of activation or repression in transcriptional control under a fixed molecular context.
Rosa Martinez-Corral, Dhana Friedrich, Robert Frömel, Lars Velten, Jeremy Gunawardena, Angela H DePace

bioRxiv· June 2024

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The Hill function is the universal Hopfield barrier for sharpness of input-output responses.
Rosa Martinez-Corral, Kee-Myoung Nam, Angela H DePace, Jeremy Gunawardena

Proc Natl Acad Sci U S A· May 2024

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The Hill function is the universal Hopfield barrier for sharpness of input-output responses.
Rosa Martinez-Corral, Kee-Myoung Nam, Angela H DePace, Jeremy Gunawardena

bioRxiv· March 2024

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Transcriptional activators in the early Drosophila embryo perform different kinetic roles.
Timothy T Harden, Ben J Vincent, Angela H DePace

Cell Syst· April 2023

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Transcriptional kinetic synergy: A complex landscape revealed by integrating modeling and synthetic biology.
Rosa Martinez-Corral, Minhee Park, Kelly M Biette, Dhana Friedrich, Clarissa Scholes, Angela H DePace

Cell Syst· April 2023

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Leadership.
Dawn Bowdish, Tejal A Desai, Angela DePace, Elizabeth S Haswell, David Baltrus

Cell Syst· January 2021

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A Mutation in the Stripe 2 Minimal Enhancer Is Buffered by Flanking Sequences.
Francheska López-Rivera, Olivia K Foster Rhoades, Ben J Vincent, Edward C G Pym, Meghan D J Bragdon, Angela H DePace

G3 (Bethesda)· December 2020

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Quantitative Comparison of the Anterior-Posterior Patterning System in the Embryos of Five Species.
Zeba Wunderlich, Charless C Fowlkes, Kelly B Eckenrode, Meghan D J Bragdon, Arash Abiri, Angela H DePace

G3 (Bethesda)· July 2019

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Dissecting the sharp response of a canonical developmental enhancer reveals multiple sources of cooperativity.
Jeehae Park, Javier Estrada, Gemma Johnson, Ben J Vincent, Chiara Ricci-Tam, Angela H DePace

Elife· June 2019

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Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo.
Clarissa Scholes, Kelly M Biette, Timothy T Harden, Angela H DePace

Cell Rep· February 2019

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Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos.
Ben J Vincent, Max V Staller, Francheska Lopez-Rivera, Meghan D J Bragdon, Edward C G Pym, Angela H DePace

PLoS Genet· September 2018

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Analysis of Genetic Variation Indicates DNA Shape Involvement in Purifying Selection.
Xiaofei Wang, Tianyin Zhou, Zeba Wunderlich, Matthew T Maurano, Angela H DePace

Mol Biol Evol· August 2018

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Transcriptional precision and accuracy in development: from measurements to models and mechanisms.
Lital Bentovim, Timothy T Harden, Angela H DePace

Development· November 2017

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Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA.
Md Abul Hassan Samee, Tara Lydiard-Martin, Kelly M Biette, Ben J Vincent, Meghan D Bragdon, Angela H DePace

Cell Rep· October 2017

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Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle.
Clarissa Scholes, Angela H DePace, Álvaro Sánchez

Cell Syst· January 2017

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SiteOut: An Online Tool to Design Binding Site-Free DNA Sequences.
Javier Estrada, Teresa Ruiz-Herrero, Clarissa Scholes, Zeba Wunderlich, Angela H DePace

PLoS One· July 2016

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Information Integration and Energy Expenditure in Gene Regulation.
Javier Estrada, Felix Wong, Angela DePace, Jeremy Gunawardena

Cell· June 2016

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The appeasement of Doug: a synthetic approach to enhancer biology.
Ben J Vincent, Javier Estrada, Angela H DePace

Integr Biol (Camb)· April 2016

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Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.
Zeba Wunderlich, Meghan D J Bragdon, Ben J Vincent, Jonathan A White, Javier Estrada, Angela H DePace

Cell Rep· March 2016

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Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers.
Zeba Wunderlich, Meghan D J Bragdon, Ben J Vincent, Jonathan A White, Javier Estrada, Angela H DePace

Cell Rep· September 2015

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Yearly planning meetings: individualized development plans aren't just more paperwork.
Ben J Vincent, Clarissa Scholes, Max V Staller, Zeba Wunderlich, Javier Estrada, Angela H DePace

Mol Cell· June 2015

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A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate.
Max V Staller, Charless C Fowlkes, Meghan D J Bragdon, Zeba Wunderlich, Javier Estrada, Angela H DePace

Development· February 2015

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Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo.
Max V Staller, Ben J Vincent, Meghan D J Bragdon, Tara Lydiard-Martin, Zeba Wunderlich, Angela H DePace

Proc Natl Acad Sci U S A· January 2015

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Comparing mRNA levels using in situ hybridization of a target gene and co-stain.
Zeba Wunderlich, Meghan D Bragdon, Angela H DePace

Methods· June 2014

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