Publications by authors named "Anna Panchenko"

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Deciphering Allosteric Modulation of Cancer-Associated Histone Missense Mutations.
Shuxiang Li, Jie Shu, James C Rober, Austin Macklem, Daniel Espiritu, Anna R Panchenko

J Mol Biol· October 2025

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Cancer histone mutations impact protein binding and DNA repair with possible links to genomic instability.
Daniel Espiritu, Yiru Sheng, Yunhui Peng, Daria Ostroverkhova, Shuxiang Li, Anna R Panchenko

Nucleic Acids Res· September 2025

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G34R cancer mutation alters the conformational ensemble and dynamics of the histone H3.3 tails.
Harrison A Fuchs, Yunhui Peng, Shine Ayyapan, Houfang Zhang, Ruben Rosas, Anna R Panchenko

bioRxiv· May 2025

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The need to implement FAIR principles in biomolecular simulations.
Rommie E Amaro, Johan Åqvist, Ivet Bahar, Federica Battistini, Adam Bellaiche, Anna R Panchenko

Nat Methods· April 2025

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Are Next-Generation Pathogenicity Predictors Applicable to Cancer?
Daria Ostroverkhova, Yiru Sheng, Anna Panchenko

J Mol Biol· August 2024

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Interpretable deep residual network uncovers nucleosome positioning and associated features.
Yosef Masoudi-Sobhanzadeh, Shuxiang Li, Yunhui Peng, Anna R Panchenko

Nucleic Acids Res· August 2024

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DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors.
Daria Ostroverkhova, Kathrin Tyryshkin, Annette K Beach, Elizabeth A Moore, Yosef Masoudi-Sobhanzadeh, Anna R Panchenko

Cell Rep· January 2024

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Detection of new pioneer transcription factors as cell-type-specific nucleosome binders.
Yunhui Peng, Wei Song, Vladimir B Teif, Ivan Ovcharenko, David Landsman, Anna R Panchenko

Elife· January 2024

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Detection of new pioneer transcription factors as cell-type specific nucleosome binders.
Yunhui Peng, Wei Song, Vladimir B Teif, Ivan Ovcharenko, David Landsman, Anna R Panchenko

bioRxiv· November 2023

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Cancer driver mutations: predictions and reality.
Daria Ostroverkhova, Teresa M Przytycka, Anna R Panchenko

Trends Mol Med· July 2023

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Survivin prevents the polycomb repressor complex 2 from methylating histone 3 lysine 27.
Maja Jensen, Venkataragavan Chandrasekaran, María-José García-Bonete, Shuxiang Li, Atsarina Larasati Anindya, Anna R Panchenko

iScience· July 2023

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Leveraging Gene Redundancy to Find New Histone Drivers in Cancer.
Daria Ostroverkhova, Daniel Espiritu, Maria J Aristizabal, Anna R Panchenko

Cancers (Basel)· June 2023

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Histone variant H2A.Z modulates nucleosome dynamics to promote DNA accessibility.
Shuxiang Li, Tiejun Wei, Anna R Panchenko

Nat Commun· February 2023

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A standardized nomenclature for mammalian histone genes.
Ruth L Seal, Paul Denny, Elspeth A Bruford, Anna K Gribkova, David Landsman, Anna R Panchenko

Epigenetics Chromatin· October 2022

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DNA methylation: Precise modulation of chromatin structure and dynamics.
Shuxiang Li, Yunhui Peng, Anna R Panchenko

Curr Opin Struct Biol· August 2022

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DNA methylation cues in nucleosome geometry, stability and unwrapping.
Shuxiang Li, Yunhui Peng, David Landsman, Anna R Panchenko

Nucleic Acids Res· February 2022

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Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails.
Yunhui Peng, Shuxiang Li, Alexey Onufriev, David Landsman, Anna R Panchenko

Nat Commun· September 2021

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DNA Methylation, Deamination, and Translesion Synthesis Combine to Generate Footprint Mutations in Cancer Driver Genes in B-Cell Derived Lymphomas and Other Cancers.
Igor B Rogozin, Abiel Roche-Lima, Kathrin Tyryshkin, Kelvin Carrasquillo-Carrión, Artem G Lada, Anna R Panchenko

Front Genet· May 2021

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Histone tails as signaling antennas of chromatin.
Yunhui Peng, Shuxiang Li, David Landsman, Anna R Panchenko

Curr Opin Struct Biol· April 2021

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Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones.
Daniel Espiritu, Anna K Gribkova, Shubhangi Gupta, Alexey K Shaytan, Anna R Panchenko

J Phys Chem B· April 2021

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Human Histone Interaction Networks: An Old Concept, New Trends.
Yunhui Peng, Yaroslav Markov, Alexander Goncearenco, David Landsman, Anna R Panchenko

J Mol Biol· March 2021

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Diving into Chromatin across Space and Time.
Yamini Dalal, Anna R Panchenko

J Mol Biol· March 2021

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Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms.
Bing-Rui Zhou, Hanqiao Feng, Seyit Kale, Tara Fox, Htet Khant, Anna R Panchenko

Mol Cell· January 2021

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Data sets on human histone interaction networks.
Yunhui Peng, Yaroslav Markov, Alexander Goncearenco, David Landsman, Anna R Panchenko

Data Brief· December 2020

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Clonal Evolution and Heterogeneity of Osimertinib Acquired Resistance Mechanisms in EGFR Mutant Lung Cancer.
Nitin Roper, Anna-Leigh Brown, Jun S Wei, Svetlana Pack, Christopher Trindade, Anna R Panchenko

Cell Rep Med· April 2020

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