Publications by authors named "Anya Tsalenko"

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Quantification of HER2-low and ultra-low expression in breast cancer specimens by quantitative IHC and artificial intelligence.
Frederik Aidt, Elad Arbel, Itay Remer, Oded Ben-David, Amir Ben-Dor, Anya Tsalenko

J Pathol Inform· November 2025

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PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.
Aivett Bilbao, Nathalie Munoz, Joonhoon Kim, Daniel J Orton, Yuqian Gao, Anya Tsalenko

Nat Commun· April 2023

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Chemically modified guide RNAs enhance CRISPR-Cas genome editing in human primary cells.
Ayal Hendel, Rasmus O Bak, Joseph T Clark, Andrew B Kennedy, Daniel E Ryan, Anya Tsalenko

Nat Biotechnol· September 2015

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ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types.
Israel Steinfeld, Roy Navon, Michael L Creech, Zohar Yakhini, Anya Tsalenko

Bioinformatics· May 2015

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Population-genetic properties of differentiated human copy-number polymorphisms.
Catarina D Campbell, Nick Sampas, Anya Tsalenko, Peter H Sudmant, Jeffrey M Kidd

Am J Hum Genet· March 2011

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Diversity of human copy number variation and multicopy genes.
Peter H Sudmant, Jacob O Kitzman, Francesca Antonacci, Can Alkan, Maika Malig, Anya Tsalenko

Science· October 2010

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Characterization of missing human genome sequences and copy-number polymorphic insertions.
Jeffrey M Kidd, Nick Sampas, Francesca Antonacci, Tina Graves, Robert Fulton, Anya Tsalenko

Nat Methods· May 2010

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Novel rank-based statistical methods reveal microRNAs with differential expression in multiple cancer types.
Roy Navon, Hui Wang, Israel Steinfeld, Anya Tsalenko, Amir Ben-Dor

PLoS One· November 2009

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Pathway based analysis of SNPs with relevance to 5-FU therapy: relation to intratumoral mRNA expression and survival.
Silje H Nordgard, Grethe I G Alnaes, Björn Hihn, Ole Christian Lingjaerde, Knut Liestøl, Anya Tsalenko

Int J Cancer· August 2008

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High definition cytogenetics and oligonucleotide aCGH analyses of cisplatin-resistant ovarian cancer cells.
Mona Prasad, Marcus Bernardini, Anya Tsalenko, Paula Marrano, Jana Paderova

Genes Chromosomes Cancer· May 2008

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The fine-scale and complex architecture of human copy-number variation.
George H Perry, Amir Ben-Dor, Anya Tsalenko, Nick Sampas, Laia Rodriguez-Revenga

Am J Hum Genet· March 2008

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Antibody Arrays Identify Potential Diagnostic Markers of Hepatocellular Carcinoma.
Hongbo Sun, Mei-Sze Chua, Dorothy Yang, Anya Tsalenko, Brian J Peter

Biomark Insights· January 2008

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Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases.
Adam J de Smith, Anya Tsalenko, Nick Sampas, Alicia Scheffer, N Alice Yamada

Hum Mol Genet· December 2007

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High resolution oligonucleotide CGH using DNA from archived prostate tissue.
Pamela L Paris, Shivaranjani Sridharan, Alicia Scheffer, Anya Tsalenko, Laurakay Bruhn

Prostate· September 2007

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Robust interlaboratory reproducibility of a gene expression signature measurement consistent with the needs of a new generation of diagnostic tools.
Robert A Ach, Arno Floore, Bo Curry, Vladimir Lazar, Annuska M Glas, Anya Tsalenko

BMC Genomics· June 2007

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Analysis of SNP-expression association matrices.
Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela Kristensen, Anne-Lise Børresen-Dale

Proc IEEE Comput Syst Bioinform Conf· May 2007

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A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.
Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela Kristensen, Anne-Lise Børresen-Dale

Bioinformatics· January 2007

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Network analysis of human in-stent restenosis.
Euan A Ashley, Rossella Ferrara, Jennifer Y King, Aditya Vailaya, Allan Kuchinsky, Anya Tsalenko

Circulation· December 2006

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Molecular signatures determining coronary artery and saphenous vein smooth muscle cell phenotypes: distinct responses to stimuli.
David Xing-Fei Deng, Joshua M Spin, Anya Tsalenko, Aditya Vailaya, Amir Ben-Dor

Arterioscler Thromb Vasc Biol· May 2006

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Genetic variation in putative regulatory loci controlling gene expression in breast cancer.
Vessela N Kristensen, Hege Edvardsen, Anya Tsalenko, Silje H Nordgard, Therese Sørlie

Proc Natl Acad Sci U S A· May 2006

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Analysis of SNP-expression association matrices.
Anya Tsalenko, Roded Sharan, Vessela Kristensen, Hege Edvardsen, Anne-Lise Børresen-Dale

J Bioinform Comput Biol· April 2006

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Transcriptional profiling of reporter genes used for molecular imaging of embryonic stem cell transplantation.
Joseph C Wu, Joshua M Spin, Feng Cao, Shuan Lin, Xiaoyan Xie, Anya Tsalenko

Physiol Genomics· March 2006

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Experimental validation of data mined single nucleotide polymorphisms from several databases and consecutive dbSNP builds.
Hege Edvardsen, Grethe Irene Grenaker Alnaes, Anya Tsalenko, Tanya Mulcahy, Anton Yuryev

Pharmacogenet Genomics· March 2006

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Differences in vascular bed disease susceptibility reflect differences in gene expression response to atherogenic stimuli.
David Xing-Fei Deng, Anya Tsalenko, Aditya Vailaya, Amir Ben-Dor, Ramendra Kundu

Circ Res· February 2006

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Multilocus analysis of SNP and metabolic data within a given pathway.
Vessela N Kristensen, Anya Tsalenko, Jurgen Geisler, Anne Faldaas, Grethe Irene Grenaker

BMC Genomics· January 2006

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