Publications by authors named "Arina D Omer"

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The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates.
Hélène Mayeur, Jake Leyhr, John Mulley, Nicolas Leurs, Léo Michel, Arina D Omer

Mol Biol Evol· December 2024

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Emx2 underlies the development and evolution of marsupial gliding membranes.
Jorge A Moreno, Olga Dudchenko, Charles Y Feigin, Sarah A Mereby, Zhuoxin Chen, Arina D Omer

Nature· May 2024

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Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes).
Sergei Kliver, Marlys L Houck, Polina L Perelman, Azamat Totikov, Andrey Tomarovsky, Arina D Omer

J Hered· August 2023

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Convergent and complementary selection shaped gains and losses of eusociality in sweat bees.
Beryl M Jones, Benjamin E R Rubin, Olga Dudchenko, Callum J Kingwell, Ian M Traniello, Arina D Omer

Nat Ecol Evol· April 2023

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Chromosome size affects sequence divergence between species through the interplay of recombination and selection.
Anna Tigano, Ruqayya Khan, Arina D Omer, David Weisz, Olga Dudchenko

Evolution· April 2022

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Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia.
Marianna Zazhytska, Albana Kodra, Daisy A Hoagland, Justin Frere, John F Fullard, Arina D Omer

Cell· March 2022

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The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution.
Matthew H Van Dam, Analyn Anzano Cabras, James B Henderson, Andrew J Rominger, Cynthia Pérez Estrada, Arina D Omer

PLoS Genet· August 2021

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Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice.
Jocelyn P Colella, Anna Tigano, Olga Dudchenko, Arina D Omer, Ruqayya Khan

J Hered· May 2021

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3D genomics across the tree of life reveals condensin II as a determinant of architecture type.
Claire Hoencamp, Olga Dudchenko, Ahmed M O Elbatsh, Sumitabha Brahmachari, Jonne A Raaijmakers, Arina D Omer

Science· May 2021

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Chromosomal-level genome assembly of the scimitar-horned oryx: Insights into diversity and demography of a species extinct in the wild.
Emily Humble, Pavel Dobrynin, Helen Senn, Justin Chuven, Alan F Scott, Arina D Omer

Mol Ecol Resour· November 2020

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The gene-rich genome of the scallop Pecten maximus.
Nathan J Kenny, Shane A McCarthy, Olga Dudchenko, Katherine James, Emma Betteridge, Arina D Omer

Gigascience· May 2020

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Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Matt A Field, Benjamin D Rosen, Olga Dudchenko, Eva K F Chan, Andre E Minoche, Arina D Omer

Gigascience· April 2020

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The genome sequence of the Eurasian red squirrel, Linnaeus 1758.
Daniel Mead, Kathryn Fingland, Rachel Cripps, Roberto Portela Miguez, Michelle Smith, Arina D Omer

Wellcome Open Res· February 2020

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Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation.
Filip Senigl, Yaakov Maman, Ravi K Dinesh, Jukka Alinikula, Rashu B Seth, Arina D Omer

Cell Rep· December 2019

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Improved reference genome of Aedes aegypti informs arbovirus vector control.
Benjamin J Matthews, Olga Dudchenko, Sarah B Kingan, Sergey Koren, Igor Antoshechkin, Arina D Omer

Nature· November 2018

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Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Arina D Omer

Cell· October 2017

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De novo assembly of the genome using Hi-C yields chromosome-length scaffolds.
Olga Dudchenko, Sanjit S Batra, Arina D Omer, Sarah K Nyquist, Marie Hoeger

Science· April 2017

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, Arina D Omer

Cell· December 2014

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The chicken or the egg: microRNA-mediated regulation of mRNA translation or mRNA stability.
Arina D Omer, Maja M Janas, Carl D Novina

Mol Cell· September 2009

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Probing the structure and function of an archaeal C/D-box methylation guide sRNA.
Arina D Omer, Maria Zago, Alex Chang, Patrick P Dennis

RNA· September 2006

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The expanding world of small RNAs in the hyperthermophilic archaeon Sulfolobus solfataricus.
Maria A Zago, Patrick P Dennis, Arina D Omer

Mol Microbiol· March 2005

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RNA-guided nucleotide modification of ribosomal and non-ribosomal RNAs in Archaea.
Sonia M Ziesche, Arina D Omer, Patrick P Dennis

Mol Microbiol· November 2004

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RNA-modifying machines in archaea.
Arina D Omer, Sonia Ziesche, Wayne A Decatur, Maurille J Fournier, Patrick P Dennis

Mol Microbiol· May 2003

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In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex.
Arina D Omer, Sonia Ziesche, Holger Ebhardt, Patrick P Dennis

Proc Natl Acad Sci U S A· April 2002

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