Publications by authors named "Arvind Chavali"

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Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.
Arvind K Chavali, Seung Y Rhee

Brief Bioinform· September 2018

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NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional Noise.
Victor C Wong, Victor L Bass, M Elise Bullock, Arvind K Chavali, Robin E C Lee

Cell Rep· January 2018

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Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
Pascal Schläpfer, Peifen Zhang, Chuan Wang, Taehyong Kim, Michael Banf, Arvind K Chavali

Plant Physiol· April 2017

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Distinct promoter activation mechanisms modulate noise-driven HIV gene expression.
Arvind K Chavali, Victor C Wong, Kathryn Miller-Jensen

Sci Rep· December 2015

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A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells.
Ramesh Ramji, Victor C Wong, Arvind K Chavali, Larisa M Gearhart, Kathryn Miller-Jensen

Integr Biol (Camb)· September 2015

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Linking genome-scale metabolic modeling and genome annotation.
Edik M Blais, Arvind K Chavali, Jason A Papin

Methods Mol Biol· July 2013

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A community-driven global reconstruction of human metabolism.
Ines Thiele, Neil Swainston, Ronan M T Fleming, Andreas Hoppe, Swagatika Sahoo, Arvind K Chavali

Nat Biotechnol· May 2013

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Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease.
Arvind K Chavali, Anna S Blazier, Jose L Tlaxca, Paul A Jensen, Richard D Pearson

BMC Syst Biol· April 2012

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A metabolic network approach for the identification and prioritization of antimicrobial drug targets.
Arvind K Chavali, Kevin M D'Auria, Erik L Hewlett, Richard D Pearson, Jason A Papin

Trends Microbiol· March 2012

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Systems analysis of small signaling modules relevant to eight human diseases.
Kelly F Benedict, Feilim Mac Gabhann, Robert K Amanfu, Arvind K Chavali, Erwin P Gianchandani

Ann Biomed Eng· February 2011

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The application of flux balance analysis in systems biology.
Erwin P Gianchandani, Arvind K Chavali, Jason A Papin

Wiley Interdiscip Rev Syst Biol Med· January 2011

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Metabolic network analysis integrated with transcript verification for sequenced genomes.
Ani Manichaikul, Lila Ghamsari, Erik F Y Hom, Chenwei Lin, Ryan R Murray, Arvind K Chavali

Nat Methods· August 2009

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Flux balance analysis: interrogating genome-scale metabolic networks.
Matthew A Oberhardt, Arvind K Chavali, Jason A Papin

Methods Mol Biol· May 2009

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Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi.
Seth B Roberts, Jennifer L Robichaux, Arvind K Chavali, Patricio A Manque, Vladimir Lee

BMC Syst Biol· May 2009

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Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling.
Arvind K Chavali, Erwin P Gianchandani, Kenneth S Tung, Michael B Lawrence, Shayn M Peirce

Trends Immunol· December 2008

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Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major.
Arvind K Chavali, Jeffrey D Whittemore, James A Eddy, Kyle T Williams, Jason A Papin

Mol Syst Biol· April 2008

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Intestinal epithelial cell up-regulation of LY6 molecules during colitis results in enhanced chemokine secretion.
Ken Flanagan, Zora Modrusan, Jennine Cornelius, Arvind Chavali, Ian Kasman

J Immunol· March 2008

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