Publications by authors named "Arvind S Mer"

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Characterization of the diversity of type IV secretion system-encoding plasmids in .
Farah Nasser, Avery Gaudreau, Shareefah Lubega, Arvin Zaker, Xuhua Xia, Arvind S Mer

Emerg Microbes Infect· December 2024

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Text-mining-based feature selection for anticancer drug response prediction.
Grace Wu, Arvin Zaker, Amirhosein Ebrahimi, Shivanshi Tripathi, Arvind Singh Mer

Bioinform Adv· March 2024

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Differential DNA damage repair and PARP inhibitor vulnerability of the mammary epithelial lineages.
Hyeyeon Kim, Kazeera Aliar, Pirashaanthy Tharmapalan, Curtis W McCloskey, Abhijith Kuttanamkuzhi, Luis Palomero, Arvind S Mer

Cell Rep· November 2023

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Spatiotemporal modeling of chemoresistance evolution in breast tumors uncovers dependencies on SLC38A7 and SLC46A1.
Yannick Audet-Delage, Catherine St-Louis, Lucía Minarrieta, Shawn McGuirk, Irwin Kurreal, Arvind Singh Mer

Cell Rep· October 2023

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Differential DNA damage repair and PARP inhibitor vulnerability of the mammary epithelial lineages.
Hyeyeon Kim, Kazeera Aliar, Pirashaanthy Tharmapalan, Curtis W McCloskey, Abhijith Kuttanamkuzhi, Luis Palomero, Arvind S Mer

Cell Rep· October 2023

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Bimodal Gene Expression in Patients with Cancer Provides Interpretable Biomarkers for Drug Sensitivity.
Wail Ba-Alawi, Sisira Kadambat Nair, Bo Li, Anthony Mammoliti, Petr Smirnov, Arvind Singh Mer

Cancer Res· July 2022

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IPO11 regulates the nuclear import of BZW1/2 and is necessary for AML cells and stem cells.
Boaz Nachmias, Dilshad H Khan, Veronique Voisin, Arvind S Mer, Geethu Emily Thomas, Aaron D Schimmer

Leukemia· May 2022

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Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer.
Chewei Anderson Chang, Jayu Jen, Shaowen Jiang, Azin Sayad, Arvind Singh Mer

Cancer Discov· April 2022

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PharmacoDB 2.0: improving scalability and transparency of in vitro pharmacogenomics analysis.
Nikta Feizi, Sisira Kadambat Nair, Petr Smirnov, Gangesh Beri, Christopher Eeles, Arvind Singh Mer

Nucleic Acids Res· January 2022

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Drug sensitivity prediction from cell line-based pharmacogenomics data: guidelines for developing machine learning models.
Hossein Sharifi-Noghabi, Soheil Jahangiri-Tazehkand, Petr Smirnov, Casey Hon, Anthony Mammoliti, Arvind Singh Mer

Brief Bioinform· November 2021

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Assessing therapy response in patient-derived xenografts.
Janosch Ortmann, Ladislav Rampášek, Elijah Tai, Arvind Singh Mer, Ruoshi Shi

Sci Transl Med· November 2021

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Orchestrating and sharing large multimodal data for transparent and reproducible research.
Anthony Mammoliti, Petr Smirnov, Minoru Nakano, Zhaleh Safikhani, Christopher Eeles, Arvind S Mer

Nat Commun· October 2021

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Proteogenomic characterization of pancreatic ductal adenocarcinoma.
Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, T Mamie Lih, Arvind Singh Mer

Cell· September 2021

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Highlights from the 16th International Society for Computational Biology Student Council Symposium 2020.
Wim L Cuypers, Handan Melike Dönertaş, Jasleen K Grewal, Nazeefa Fatima, Chase Donnelly, Arvind Singh Mer

F1000Res· July 2021

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Novel subtypes of -mutated AML with distinct outcome.
Arvind Singh Mer, Mark D Minden, Benjamin Haibe-Kains, Aaron D Schimmer

Mol Cell Oncol· June 2021

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Biological and therapeutic implications of a unique subtype of NPM1 mutated AML.
Arvind Singh Mer, Emily M Heath, Seyed Ali Madani Tonekaboni, Nergiz Dogan-Artun, Sisira Kadambat Nair, Aaron D Schimmer

Nat Commun· February 2021

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Organoid Cultures as Preclinical Models of Non-Small Cell Lung Cancer.
Ruoshi Shi, Nikolina Radulovich, Christine Ng, Ni Liu, Hirotsugu Notsuda, Arvind Singh Mer

Clin Cancer Res· March 2020

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Integrative Pharmacogenomics Analysis of Patient-Derived Xenografts.
Arvind S Mer, Wail Ba-Alawi, Petr Smirnov, Yi X Wang, Ben Brew

Cancer Res· September 2019

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Expression levels of long non-coding RNAs are prognostic for AML outcome.
Arvind Singh Mer, Johan Lindberg, Christer Nilsson, Daniel Klevebring, Mei Wang

J Hematol Oncol· April 2018

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Integrative cancer pharmacogenomics to establish drug mechanism of action: drug repurposing.
Nehme El-Hachem, Wail Ba-Alawi, Ian Smith, Arvind Singh Mer, Benjamin Haibe-Kains

Pharmacogenomics· November 2017

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Software for the Integration of Multiomics Experiments in Bioconductor.
Marcel Ramos, Lucas Schiffer, Angela Re, Rimsha Azhar, Azfar Basunia, Arvind S Mer

Cancer Res· November 2017

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Study design requirements for RNA sequencing-based breast cancer diagnostics.
Arvind Singh Mer, Daniel Klevebring, Henrik Grönberg, Mattias Rantalainen

Sci Rep· February 2016

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mBISON: Finding miRNA target over-representation in gene lists from ChIP-sequencing data.
Marie Luise Gebhardt, Arvind Singh Mer, Miguel Angel Andrade-Navarro

BMC Res Notes· April 2015

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A novel approach for protein subcellular location prediction using amino acid exposure.
Arvind Singh Mer, Miguel A Andrade-Navarro

BMC Bioinformatics· November 2013

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MicroRNAs modulate the dynamics of the NF-κB signaling pathway.
Candida Vaz, Arvind Singh Mer, Alok Bhattacharya, Ramakrishna Ramaswamy

PLoS One· May 2012

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