Publications by authors named "Assaf Amitai"

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Non-small cell lung cancer molecular subtypes and vulnerability to immunotherapy treatment combinations.
Tianshi Lu, Habib Hamidi, Mark A Socinski, Martin Reck, Federico Cappuzzo, Assaf Amitai

Nat Commun· December 2025

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Viral surface geometry shapes influenza and coronavirus spike evolution through antibody pressure.
Assaf Amitai

PLoS Comput Biol· December 2021

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Learning from HIV-1 to predict the immunogenicity of T cell epitopes in SARS-CoV-2.
Ang Gao, Zhilin Chen, Assaf Amitai, Julia Doelger, Vamsee Mallajosyula

iScience· April 2021

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Damage-induced chromatome dynamics link Ubiquitin ligase and proteasome recruitment to histone loss and efficient DNA repair.
Kiran Challa, Christoph D Schmid, Saho Kitagawa, Anaïs Cheblal, Vytautas Iesmantavicius, Assaf Amitai

Mol Cell· February 2021

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Defining and Manipulating B Cell Immunodominance Hierarchies to Elicit Broadly Neutralizing Antibody Responses against Influenza Virus.
Assaf Amitai, Maya Sangesland, Ralston M Barnes, Daniel Rohrer, Nils Lonberg

Cell Syst· December 2020

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Viral surface geometry shapes influenza and coronavirus spike evolution through antibody pressure.
Assaf Amitai

bioRxiv· December 2020

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DNA Damage-Induced Nucleosome Depletion Enhances Homology Search Independently of Local Break Movement.
Anaïs Cheblal, Kiran Challa, Andrew Seeber, Kenji Shimada, Haruka Yoshida, Assaf Amitai

Mol Cell· October 2020

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Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields.
Andrews Akwasi Agbleke, Assaf Amitai, Jason D Buenrostro, Aditi Chakrabarti, Lingluo Chu

Mol Cell· September 2020

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Guided nuclear exploration increases CTCF target search efficiency.
Anders S Hansen, Assaf Amitai, Claudia Cattoglio, Robert Tjian, Xavier Darzacq

Nat Chem Biol· March 2020

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The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation.
Assaf Amitai, Arup K Chakraborty, Mehran Kardar

PLoS Comput Biol· August 2018

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Chromatin Configuration Affects the Dynamics and Distribution of a Transiently Interacting Protein.
Assaf Amitai

Biophys J· February 2018

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A Population Dynamics Model for Clonal Diversity in a Germinal Center.
Assaf Amitai, Luka Mesin, Gabriel D Victora, Mehran Kardar, Arup K Chakraborty

Front Microbiol· September 2017

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Histone degradation in response to DNA damage enhances chromatin dynamics and recombination rates.
Michael H Hauer, Andrew Seeber, Vijender Singh, Raphael Thierry, Ragna Sack, Assaf Amitai

Nat Struct Mol Biol· February 2017

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Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories.
Assaf Amitai, Andrew Seeber, Susan M Gasser, David Holcman

Cell Rep· January 2017

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Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.
Guido Tiana, Assaf Amitai, Tim Pollex, Tristan Piolot, David Holcman

Biophys J· March 2016

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Analysis of Single Locus Trajectories for Extracting In Vivo Chromatin Tethering Interactions.
Assaf Amitai, Mathias Toulouze, Karine Dubrana, David Holcman

PLoS Comput Biol· August 2015

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First-passage distributions in a collective model of anomalous diffusion with tunable exponent.
Assaf Amitai, Yacov Kantor, Mehran Kardar

Phys Rev E Stat Nonlin Soft Matter Phys· January 2010

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