Publications by authors named "Astrid Gall"

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The genetic architecture of HIV-1 virulence.
François Blanquart, Chris Wymant, Matthew Hall, Robert Power, Tanya Golubchik, Astrid Gall

Virus Evol· December 2025

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HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence data.
Tanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, Chris Wymant, David Bonsall, Astrid Gall

BMC Bioinformatics· August 2025

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Frequency matters: comparison of drug resistance mutation detection by Sanger and next-generation sequencing in HIV-1.
Suraj Balakrishna, Tom Loosli, Maryam Zaheri, Paul Frischknecht, Michael Huber, Astrid Gall

J Antimicrob Chemother· March 2023

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Scripting Analyses of Genomes in Ensembl Plants.
Bruno Contreras-Moreira, Guy Naamati, Marc Rosello, James E Allen, Sarah E Hunt, Astrid Gall

Methods Mol Biol· March 2022

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Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral load.
Lele Zhao, Chris Wymant, François Blanquart, Tanya Golubchik, Astrid Gall

Virus Evol· March 2022

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A highly virulent variant of HIV-1 circulating in the Netherlands.
Chris Wymant, Daniela Bezemer, François Blanquart, Luca Ferretti, Astrid Gall

Science· February 2022

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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
Nishadi H De Silva, Jyothish Bhai, Marc Chakiachvili, Bruno Contreras-Moreira, Carla Cummins, Astrid Gall

Nucleic Acids Res· January 2022

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Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
Andrew D Yates, James Allen, Ridwan M Amode, Andrey G Azov, Matthieu Barba, Astrid Gall

Nucleic Acids Res· January 2022

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Accessing Livestock Resources in Ensembl.
Fergal J Martin, Astrid Gall, Michal Szpak, Paul Flicek

Front Genet· April 2021

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Ensembl 2021.
Kevin L Howe, Premanand Achuthan, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, Astrid Gall

Nucleic Acids Res· January 2021

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Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, Uganda.
Oliver Ratmann, Joseph Kagaayi, Matthew Hall, Tanya Golubchick, Godfrey Kigozi, Astrid Gall

Lancet HIV· March 2020

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Ensembl Genomes 2020-enabling non-vertebrate genomic research.
Kevin L Howe, Bruno Contreras-Moreira, Nishadi De Silva, Gareth Maslen, Wasiu Akanni, Astrid Gall

Nucleic Acids Res· January 2020

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Ensembl 2020.
Andrew D Yates, Premanand Achuthan, Wasiu Akanni, James Allen, Jamie Allen, Astrid Gall

Nucleic Acids Res· January 2020

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Pervasive and non-random recombination in near full-length HIV genomes from Uganda.
Heather E Grant, Emma B Hodcroft, Deogratius Ssemwanga, John M Kitayimbwa, Gonzalo Yebra, Astrid Gall

Virus Evol· January 2020

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Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis.
Oliver Ratmann, M Kate Grabowski, Matthew Hall, Tanya Golubchik, Chris Wymant, Astrid Gall

Nat Commun· March 2019

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Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes.
Marion Cornelissen, Astrid Gall, Antoinette van der Kuyl, Chris Wymant, François Blanquart

Methods Mol Biol· February 2019

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Ensembl 2019.
Fiona Cunningham, Premanand Achuthan, Wasiu Akanni, James Allen, M Ridwan Amode, Astrid Gall

Nucleic Acids Res· January 2019

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The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.
Antoinette C van der Kuyl, Monique Vink, Fokla Zorgdrager, Margreet Bakker, Chris Wymant, Astrid Gall

Virus Res· May 2018

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PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.
Chris Wymant, Matthew Hall, Oliver Ratmann, David Bonsall, Tanya Golubchik, Astrid Gall

Mol Biol Evol· March 2018

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Ensembl 2018.
Daniel R Zerbino, Premanand Achuthan, Wasiu Akanni, M Ridwan Amode, Daniel Barrell, Astrid Gall

Nucleic Acids Res· January 2018

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Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient.
Jacqui Brener, Astrid Gall, Jacob Hurst, Rebecca Batorsky, Nora Lavandier

Retrovirology· January 2018

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Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.
Chris Wymant, François Blanquart, Tanya Golubchik, Astrid Gall, Margreet Bakker

Virus Evol· January 2018

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Genome-wide evolutionary dynamics of influenza B viruses on a global scale.
Pinky Langat, Jayna Raghwani, Gytis Dudas, Thomas A Bowden, Stephanie Edwards, Astrid Gall

PLoS Pathog· December 2017

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Role of HIV-specific CD8 T cells in pediatric HIV cure strategies after widespread early viral escape.
Ellen M Leitman, Christina F Thobakgale, Emily Adland, M Azim Ansari, Jayna Raghwani, Astrid Gall

J Exp Med· November 2017

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Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe.
François Blanquart, Chris Wymant, Marion Cornelissen, Astrid Gall, Margreet Bakker

PLoS Biol· July 2017

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