Publications by authors named "Ava Hoffman"

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Unearthing soil biodiversity through collaborative genomic research and education.

Nat Genet· December 2025

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Insights into the Datasets, Tools, and Training Needs of the AnVIL Community: 2024.
Kathryn J Isaac, Katherine E L Cox, Kai Yin Ho, Elizabeth M Humphries, Natalie Kucher, Ava M Hoffman

bioRxiv· November 2025

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The value of long-term ecological research for evolutionary insights.
Jennifer M Cocciardi, Ava M Hoffman, Diego F Alvarado-Serrano, Jill Anderson, Meghan Blumstein

Nat Ecol Evol· September 2024

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Best practices to evaluate the impact of biomedical research software-metric collection beyond citations.
Awan Afiaz, Andrey A Ivanov, John Chamberlin, David Hanauer, Candace L Savonen, Ava M Hoffman

Bioinformatics· August 2024

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Ten simple rules for teaching an introduction to R.
Ava M Hoffman, Carrie Wright

PLoS Comput Biol· May 2024

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Motivation, inclusivity, and realism should drive data science education.
Candace Savonen, Carrie Wright, Ava Hoffman, Elizabeth Humphries, Katherine Cox

F1000Res· May 2024

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What's the best chatbot for me? Researchers put LLMs through their paces.
Elizabeth M Humphries, Carrie Wright, Ava M Hoffman, Candace Savonen, Jeffrey T Leek

Nature· September 2023

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Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?
Awan Afiaz, Andrey A Ivanov, John Chamberlin, David Hanauer, Candace L Savonen, Ava M Hoffman

ArXiv· June 2023

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Open-source Tools for Training Resources - OTTR.
Candace Savonen, Carrie Wright, Ava M Hoffman, John Muschelli, Katherine Cox

J Stat Data Sci Educ· October 2022

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Is a drought a drought in grasslands? Productivity responses to different types of drought.
Charles J W Carroll, Ingrid J Slette, Robert J Griffin-Nolan, Lauren E Baur, Ava M Hoffman

Oecologia· December 2021

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Resolving the Dust Bowl paradox of grassland responses to extreme drought.
Alan K Knapp, Anping Chen, Robert J Griffin-Nolan, Lauren E Baur, Charles J W Carroll, Ava M Hoffman

Proc Natl Acad Sci U S A· September 2020

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Genetic and functional variation across regional and local scales is associated with climate in a foundational prairie grass.
Ava M Hoffman, Julie A Bushey, Troy W Ocheltree, Melinda D Smith

New Phytol· July 2020

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Rapid recovery of ecosystem function following extreme drought in a South African savanna grassland.
Kevin R Wilcox, Sally E Koerner, David L Hoover, Andrea K Borkenhagen, Deron E Burkepile, Ava M Hoffman

Ecology· April 2020

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A reality check for climate change experiments: Do they reflect the real world?
Alan K Knapp, Charles J W Carroll, Robert J Griffin-Nolan, Ingrid J Slette, Francis A Chaves, Ava M Hoffman

Ecology· October 2018

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Gene expression differs in codominant prairie grasses under drought.
Ava M Hoffman, Melinda D Smith

Mol Ecol Resour· March 2018

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Codominant grasses differ in gene expression under experimental climate extremes in native tallgrass prairie.
Ava M Hoffman, Meghan L Avolio, Alan K Knapp, Melinda D Smith

PeerJ· February 2018

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Underappreciated problems of low replication in ecological field studies.
Nathan P Lemoine, Ava Hoffman, Andrew J Felton, Lauren Baur, Francis Chaves

Ecology· October 2016

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Gene expression patterns of two dominant tallgrass prairie species differ in response to warming and altered precipitation.
Melinda D Smith, Ava M Hoffman, Meghan L Avolio

Sci Rep· May 2016

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Use of ex vitro composite plants to study the interaction of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides.
Karolina E Mellor, Ava M Hoffman, Michael P Timko

Plant Methods· June 2012

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