Publications by authors named "Candace Savonen"

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Best practices to evaluate the impact of biomedical research software-metric collection beyond citations.
Awan Afiaz, Andrey A Ivanov, John Chamberlin, David Hanauer, Candace L Savonen

Bioinformatics· August 2024

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Motivation, inclusivity, and realism should drive data science education.
Candace Savonen, Carrie Wright, Ava Hoffman, Elizabeth Humphries, Katherine Cox

F1000Res· May 2024

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What's the best chatbot for me? Researchers put LLMs through their paces.
Elizabeth M Humphries, Carrie Wright, Ava M Hoffman, Candace Savonen, Jeffrey T Leek

Nature· September 2023

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OpenPBTA: The Open Pediatric Brain Tumor Atlas.
Joshua A Shapiro, Krutika S Gaonkar, Stephanie J Spielman, Candace L Savonen, Chante J Bethell

Cell Genom· July 2023

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Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.
Mai T Dang, Michael V Gonzalez, Krutika S Gaonkar, Komal S Rathi, Patricia Young, Candace Savonen

Cell Rep· June 2023

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Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?
Awan Afiaz, Andrey A Ivanov, John Chamberlin, David Hanauer, Candace L Savonen

ArXiv· June 2023

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Open-source Tools for Training Resources - OTTR.
Candace Savonen, Carrie Wright, Ava M Hoffman, John Muschelli, Katherine Cox

J Stat Data Sci Educ· October 2022

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Macrophages in SHH subgroup medulloblastoma display dynamic heterogeneity that varies with treatment modality.
Mai T Dang, Michael V Gonzalez, Krutika S Gaonkar, Komal S Rathi, Patricia Young, Candace Savonen

Cell Rep· March 2021

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A Novel Application of Mixed Effects Models for Reconciling Base-Pair Resolution 5-Methylcytosine and 5-Hydroxymethylcytosine Data in Neuroepigenetics.
Joseph Kochmanski, Candace Savonen, Alison I Bernstein

Front Genet· September 2019

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Differentially expressed gene networks, biomarkers, long noncoding RNAs, and shared responses with cocaine identified in the midbrains of human opioid abusers.
Manal H Saad, Matthew Rumschlag, Michael H Guerra, Candace L Savonen, Alaina M Jaster

Sci Rep· February 2019

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Opioid Deaths: Trends, Biomarkers, and Potential Drug Interactions Revealed by Decision Tree Analyses.
Manal H Saad, Candace L Savonen, Matthew Rumschlag, Sokol V Todi, Carl J Schmidt

Front Neurosci· October 2018

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Investigating the potential influence of cause of death and cocaine levels on the differential expression of genes associated with cocaine abuse.
Michael J Bannon, Candace L Savonen, Zachary J Hartley, Magen M Johnson, Carl J Schmidt

PLoS One· March 2016

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Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers.
Michael J Bannon, Candace L Savonen, Hui Jia, Fabien Dachet, Steven D Halter

J Neurochem· October 2015

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