Publications by authors named "Avik Datta"

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Genetic perturbation of PU.1 binding and chromatin looping at neutrophil enhancers associates with autoimmune disease.
Stephen Watt, Louella Vasquez, Klaudia Walter, Alice L Mann, Kousik Kundu, Avik Datta

Nat Commun· April 2021

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Evolution of Advanced Chronic Lymphoid Leukemia Unveiled by Single-Cell Transcriptomics: A Case Report.
Pavel Ostasov, Henry Robertson, Paolo Piazza, Avik Datta, Jane Apperley

Front Oncol· October 2020

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Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.
Warren A Cheung, Xiaojian Shao, Andréanne Morin, Valérie Siroux, Tony Kwan, Avik Datta

Genome Biol· May 2019

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Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils.
Luigi Grassi, Farzin Pourfarzad, Sebastian Ullrich, Angelika Merkel, Felipe Were, Avik Datta

Cell Rep· September 2018

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The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia.
Renée Beekman, Vicente Chapaprieta, Núria Russiñol, Roser Vilarrasa-Blasi, Núria Verdaguer-Dot, Avik Datta

Nat Med· June 2018

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Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.
Warren A Cheung, Xiaojian Shao, Andréanne Morin, Valérie Siroux, Tony Kwan, Avik Datta

Genome Biol· March 2017

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Decoding the DNA Methylome of Mantle Cell Lymphoma in the Light of the Entire B Cell Lineage.
Ana C Queirós, Renée Beekman, Roser Vilarrasa-Blasi, Martí Duran-Ferrer, Guillem Clot, Avik Datta

Cancer Cell· November 2016

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Distinct Trends of DNA Methylation Patterning in the Innate and Adaptive Immune Systems.
Ronald P Schuyler, Angelika Merkel, Emanuele Raineri, Lucia Altucci, Edo Vellenga, Avik Datta

Cell Rep· November 2016

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Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells.
Lu Chen, Bing Ge, Francesco Paolo Casale, Louella Vasquez, Tony Kwan, Avik Datta

Cell· November 2016

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Increased DNA methylation variability in type 1 diabetes across three immune effector cell types.
Dirk S Paul, Andrew E Teschendorff, Mary A N Dang, Robert Lowe, Mohammed I Hawa, Avik Datta

Nat Commun· November 2016

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Whole-genome fingerprint of the DNA methylome during human B cell differentiation.
Marta Kulis, Angelika Merkel, Simon Heath, Ana C Queirós, Ronald P Schuyler, Avik Datta

Nat Genet· July 2015

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Whole-epigenome analysis in multiple myeloma reveals DNA hypermethylation of B cell-specific enhancers.
Xabier Agirre, Giancarlo Castellano, Marien Pascual, Simon Heath, Marta Kulis, Avik Datta

Genome Res· April 2015

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Rule-based integration of RNA-Seq analyses tools for identification of novel transcripts.
Harshal Inamdar, Avik Datta, K Sunitha Manjari, Rajendra Joshi

J Bioinform Comput Biol· October 2014

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A large-scale evaluation of computational protein function prediction.
Predrag Radivojac, Wyatt T Clark, Tal Ronnen Oron, Alexandra M Schnoes, Tobias Wittkop, Avik Datta

Nat Methods· March 2013

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Anvaya: a workflows environment for automated genome analysis.
Bhakti Limaye, Ruma Banerjee, Avik Datta, Harshal Inamdar, Pankaj Vats

J Bioinform Comput Biol· August 2012

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Genome sequences of Salmonella enterica serovar typhimurium, Choleraesuis, Dublin, and Gallinarum strains of well- defined virulence in food-producing animals.
Emily J Richardson, Bhakti Limaye, Harshal Inamdar, Avik Datta, K Sunitha Manjari

J Bacteriol· June 2011

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