Publications by authors named "Aziz Mithani"

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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2025.
Matthew Thakur, Nicolas Bosc, Cath Brooksbank, Christina Ernst, Mallory A Freeberg, Aziz Mithani

Nucleic Acids Res· November 2025

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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2024.
Matthew Thakur, Catherine Brooksbank, Robert D Finn, Helen V Firth, Julia Foreman, Aziz Mithani

Nucleic Acids Res· January 2025

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EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023.
Matthew Thakur, Annalisa Buniello, Catherine Brooksbank, Kim T Gurwitz, Matthew Hall, Aziz Mithani

Nucleic Acids Res· January 2024

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Roast: a tool for reference-free optimization of supertranscriptome assemblies.
Madiha Shabbir, Aziz Mithani

BMC Bioinformatics· January 2024

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Kinome-Wide RNAi Screen Uncovers Role of Ballchen in Maintenance of Gene Activation by Trithorax Group in .
Muhammad Haider Farooq Khan, Jawad Akhtar, Zain Umer, Najma Shaheen, Ammad Shaukat, Aziz Mithani

Front Cell Dev Biol· March 2021

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Thermal stress accelerates mutation rate.
Eric J Belfield, Carly Brown, Zhong Jie Ding, Lottie Chapman, Mengqian Luo, Aziz Mithani

Genome Res· January 2021

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A cell-based high-throughput screen identifies inhibitors that overcome P-glycoprotein (Pgp)-mediated multidrug resistance.
Rida Zahra, Muhammad Furqan, Rahim Ullah, Aziz Mithani, Rahman Shah Zaib Saleem

PLoS One· August 2020

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Transcriptomic analysis reveals differential gene expression, alternative splicing, and novel exons during mouse trophoblast stem cell differentiation.
Rahim Ullah, Ambreen Naz, Hafiza Sara Akram, Zakir Ullah, Muhammad Tariq, Aziz Mithani

Stem Cell Res Ther· August 2020

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MAPPS: A Web-Based Tool for Metabolic Pathway Prediction and Network Analysis in the Postgenomic Era.
Muhammad Rizwan Riaz, Gail M Preston, Aziz Mithani

ACS Synth Biol· May 2020

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Genome-wide RNAi screen in Drosophila reveals Enok as a novel trithorax group regulator.
Zain Umer, Jawad Akhtar, Muhammad Haider Farooq Khan, Najma Shaheen, Muhammad Abdul Haseeb, Aziz Mithani

Epigenetics Chromatin· September 2019

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DNA mismatch repair preferentially protects genes from mutation.
Eric J Belfield, Zhong Jie Ding, Fiona J C Jamieson, Anne M Visscher, Shao Jian Zheng, Aziz Mithani

Genome Res· January 2018

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HANDS2: accurate assignment of homoeallelic base-identity in allopolyploids despite missing data.
Amina Khan, Eric J Belfield, Nicholas P Harberd, Aziz Mithani

Sci Rep· July 2016

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Microarray-based optimization to detect genomic deletion mutations.
Eric J Belfield, Carly Brown, Xiangchao Gan, Caifu Jiang, Dilair Baban, Aziz Mithani

Genom Data· December 2014

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Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations.
Caifu Jiang, Aziz Mithani, Eric J Belfield, Richard Mott, Laurence D Hurst

Genome Res· November 2014

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Patterns of homoeologous gene expression shown by RNA sequencing in hexaploid bread wheat.
Lindsey J Leach, Eric J Belfield, Caifu Jiang, Carly Brown, Aziz Mithani

BMC Genomics· April 2014

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Microarray-based ultra-high resolution discovery of genomic deletion mutations.
Eric J Belfield, Carly Brown, Xiangchao Gan, Caifu Jiang, Dilair Baban, Aziz Mithani

BMC Genomics· March 2014

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HANDS: a tool for genome-wide discovery of subgenome-specific base-identity in polyploids.
Aziz Mithani, Eric J Belfield, Carly Brown, Caifu Jiang, Lindsey J Leach

BMC Genomics· September 2013

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ROS-mediated vascular homeostatic control of root-to-shoot soil Na delivery in Arabidopsis.
Caifu Jiang, Eric J Belfield, Aziz Mithani, Anne Visscher, Jiannis Ragoussis

EMBO J· November 2012

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Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana.
Eric J Belfield, Xiangchao Gan, Aziz Mithani, Carly Brown, Caifu Jiang

Genome Res· July 2012

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Regenerant Arabidopsis lineages display a distinct genome-wide spectrum of mutations conferring variant phenotypes.
Caifu Jiang, Aziz Mithani, Xiangchao Gan, Eric J Belfield, John P Klingler

Curr Biol· August 2011

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Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas.
Aziz Mithani, Jotun Hein, Gail M Preston

Mol Biol Evol· January 2011

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A Bayesian approach to the evolution of metabolic networks on a phylogeny.
Aziz Mithani, Gail M Preston, Jotun Hein

PLoS Comput Biol· August 2010

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Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison.
Aziz Mithani, Gail M Preston, Jotun Hein

Bioinformatics· July 2009

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A stochastic model for the evolution of metabolic networks with neighbor dependence.
Aziz Mithani, Gail M Preston, Jotun Hein

Bioinformatics· June 2009

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