Publications by authors named "Barbra D Ferrell"

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Comparative Analysis Reveals Host Species-Dependent Diversity Among 16 Virulent Bacteriophages Isolated Against Soybean spp.
Emily A Morgese, Barbra D Ferrell, Spencer C Toth, Shawn W Polson, K Eric Wommack

Viruses· November 2025

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Comparative Analysis Reveals Host Species-Dependent Diversity Among 16 Virulent Bacteriophages Isolated Against Soybean spp.
Emily A Morgese, Barbra D Ferrell, Spencer C Toth, Shawn W Polson, K Eric Wommack

bioRxiv· October 2025

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Fine-tuning protein language models unlocks the potential of underrepresented viral proteomes.
Rajan Sawhney, Barbra D Ferrell, Thibaut Dejean, Zachary Schreiber, William Harrigan

PeerJ· September 2025

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Extending Protein Language Models to a Viral Genomic Scale Using Biologically Induced Sparse Attention.
Thibaut Dejean, Barbra D Ferrell, William Harrigan, Zachary D Schreiber, Rajan Sawhney

bioRxiv· June 2025

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Soybean spp. Spontaneously Produce Abundant and Diverse Temperate Phages in Culture.
Vanessa A Richards, Barbra D Ferrell, Shawn W Polson, K Eric Wommack, Jeffry J Fuhrmann

Viruses· November 2024

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Improvements in viral gene annotation using large language models and soft alignments.
William L Harrigan, Barbra D Ferrell, K Eric Wommack, Shawn W Polson, Zachary D Schreiber

BMC Bioinformatics· April 2024

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Ubiquitous, B-dependent virioplankton utilizing ribonucleotide-triphosphate reductase demonstrate interseasonal dynamics and associate with a diverse range of bacterial hosts in the pelagic ocean.
Ling-Yi Wu, Gonçalo J Piedade, Ryan M Moore, Amelia O Harrison, Ana M Martins, Barbra D Ferrell

ISME Commun· October 2023

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Spontaneously Produced Lysogenic Phages Are an Important Component of the Soybean Mobilome.
Prasanna Joglekar, Barbra D Ferrell, Tessa Jarvis, Kona Haramoto, Nicole Place

mBio· April 2023

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Marine viruses and climate change: Virioplankton, the carbon cycle, and our future ocean.
Hannah Locke, Kay D Bidle, Kimberlee Thamatrakoln, Christopher T Johns, Juan A Bonachela, Barbra D Ferrell

Adv Virus Res· October 2022

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Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes.
Rachel A Keown, Jacob T Dums, Phillip J Brumm, Joyanne MacDonald, David A Mead, Barbra D Ferrell

Front Microbiol· April 2022

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Towards an integrative view of virus phenotypes.
John P DeLong, Maitham A Al-Sammak, Zeina T Al-Ameeli, David D Dunigan, Kyle F Edwards, Barbra D Ferrell

Nat Rev Microbiol· February 2022

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CRISPR Spacers Indicate Preferential Matching of Specific Virioplankton Genes.
Daniel J Nasko, Barbra D Ferrell, Ryan M Moore, Jaysheel D Bhavsar, Shawn W Polson

mBio· March 2019

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Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton.
Daniel J Nasko, Jessica Chopyk, Eric G Sakowski, Barbra D Ferrell, Shawn W Polson

Front Microbiol· December 2018

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Aquatic hazard, bioaccumulation and screening risk assessment for ammonium 2,3,3,3-tetrafluoro-2-(heptafluoropropoxy)-propanoate.
Robert A Hoke, Barbra D Ferrell, Terry L Sloman, Robert C Buck, L William Buxton

Chemosphere· April 2016

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Aquatic hazard, bioaccumulation and screening risk assessment for 6:2 fluorotelomer sulfonate.
Robert A Hoke, Barbra D Ferrell, Tim Ryan, Terry L Sloman, John W Green

Chemosphere· June 2015

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Intra- and interlaboratory reliability of a cryopreserved trout hepatocyte assay for the prediction of chemical bioaccumulation potential.
Kellie A Fay, Robert T Mingoia, Ina Goeritz, Diane L Nabb, Alex D Hoffman, Barbra D Ferrell

Environ Sci Technol· July 2014

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Comparative acute freshwater hazard assessment and preliminary PNEC development for eight fluorinated acids.
Robert A Hoke, Laurie D Bouchelle, Barbra D Ferrell, Robert C Buck

Chemosphere· May 2012

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