Publications by authors named "Barry L Wanner"

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Cell Lysis Directed by SulA in Response to DNA Damage in .
Masayuki Murata, Keiko Nakamura, Tomoyuki Kosaka, Natsuko Ota, Ayumi Osawa, Barry L Wanner

Int J Mol Sci· April 2021

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Asymmetric polar localization dynamics of the serine chemoreceptor protein Tsr in Escherichia coli.
Dongmyung Oh, Yang Yu, Hochan Lee, Jae-Hyung Jeon, Barry L Wanner

PLoS One· July 2018

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Design, synthesis, and testing toward a 57-codon genome.
Nili Ostrov, Matthieu Landon, Marc Guell, Gleb Kuznetsov, Jun Teramoto, Barry L Wanner

Science· August 2016

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Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.
Kenji Nakahigashi, Yuki Takai, Michiko Kimura, Nozomi Abe, Toru Nakayashiki, Barry L Wanner

DNA Res· June 2016

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Toward Network Biology in E. coli Cell.
Hirotada Mori, Rikiya Takeuchi, Yuta Otsuka, Steven Bowden, Katsushi Yokoyama, Barry L Wanner

Adv Exp Med Biol· April 2016

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Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.
Hirotada Mori, Tomoya Baba, Katsushi Yokoyama, Rikiya Takeuchi, Wataru Nomura, Barry L Wanner

Methods Mol Biol· October 2015

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GenoBase: comprehensive resource database of Escherichia coli K-12.
Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Barry L Wanner

Nucleic Acids Res· January 2015

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Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12.
Han Tek Yong, Natsuko Yamamoto, Rikiya Takeuchi, Yi-Ju Hsieh, Tom M Conrad, Barry L Wanner

Genes Genet Syst· September 2014

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Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing.
Tyrrell Conway, James P Creecy, Scott M Maddox, Joe E Grissom, Trevor L Conkle, Barry L Wanner

mBio· July 2014

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Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli.
Rikiya Takeuchi, Takeyuki Tamura, Toru Nakayashiki, Yuichirou Tanaka, Ai Muto, Barry L Wanner

BMC Microbiol· June 2014

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What hath DNA wrought? CRISPR-CAS gene silencing and engineering from bacteria to humans: comment on "Diversity, evolution, and therapeutic applications of small RNAs in prokaryotic and eukaryotic immune systems" by Edwin L. Cooper and Nicola Overstreet.
Barry L Wanner, Jun Teramoto, Hirotada Mori

Phys Life Rev· March 2014

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Dynamics of the serine chemoreceptor in the Escherichia coli inner membrane: a high-speed single-molecule tracking study.
Dongmyung Oh, Yang Yu, Hochan Lee, Barry L Wanner, Ken Ritchie

Biophys J· January 2014

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The tRNA thiolation pathway modulates the intracellular redox state in Escherichia coli.
Toru Nakayashiki, Natsumi Saito, Rikiya Takeuchi, Hiroshi Kadokura, Kenji Nakahigashi, Barry L Wanner

J Bacteriol· May 2013

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Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system.
Kirill A Datsenko, Ksenia Pougach, Anton Tikhonov, Barry L Wanner, Konstantin Severinov

Nat Commun· July 2012

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Characterization of peptide chain length and constituency requirements for YejABEF-mediated uptake of microcin C analogues.
Gaston H M Vondenhoff, Bart Blanchaert, Sophie Geboers, Teymur Kazakov, Kirill A Datsenko, Barry L Wanner

J Bacteriol· July 2011

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Welcome to microbial informatics and experimentation.
Michael J Wise, Barry L Wanner

Microb Inform Exp· June 2011

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Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.
Yukako Tohsato, Tomoya Baba, Yusaku Mazaki, Masahiro Ito, Barry L Wanner

J Bioinform Comput Biol· December 2010

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Transcription, processing and function of CRISPR cassettes in Escherichia coli.
Ksenia Pougach, Ekaterina Semenova, Ekaterina Bogdanova, Kirill A Datsenko, Marko Djordjevic, Barry L Wanner

Mol Microbiol· September 2010

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The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology.
Seesandra V Rajagopala, Natsuko Yamamoto, Adrienne E Zweifel, Tomoko Nakamichi, Hsi-Kuang Huang, Barry L Wanner

BMC Genomics· August 2010

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Global regulation by the seven-component Pi signaling system.
Yi-Ju Hsieh, Barry L Wanner

Curr Opin Microbiol· April 2010

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Stochastic kinetic model of two component system signalling reveals all-or-none, graded and mixed mode stochastic switching responses.
Andrzej M Kierzek, Lu Zhou, Barry L Wanner

Mol Biosyst· March 2010

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Update on the Keio collection of Escherichia coli single-gene deletion mutants.
Natsuko Yamamoto, Kenji Nakahigashi, Tomoko Nakamichi, Mihoko Yoshino, Yuki Takai, Barry L Wanner

Mol Syst Biol· February 2010

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Evidence against the physiological role of acetyl phosphate in the phosphorylation of the ArcA response regulator in Escherichia coli.
Xueqiao Liu, Gabriela R Peña Sandoval, Barry L Wanner, Won Seok Jung, Dimitris Georgellis

J Microbiol· October 2009

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Genome-wide screens: novel mechanisms in colicin import and cytotoxicity.
Onkar Sharma, Kirill A Datsenko, Sara C Ess, Mariya V Zhalnina, Barry L Wanner

Mol Microbiol· August 2009

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In vivo recognition of Bacillus subtilis by desorption electrospray ionization mass spectrometry (DESI-MS).
Yishu Song, Nari Talaty, Kirill Datsenko, Barry L Wanner, R Graham Cooks

Analyst· May 2009

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