Publications by authors named "Tomoya Baba"

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Factors affecting the success of peripheral pulmonary lesion diagnosis via transbronchial needle aspiration and transbronchial biopsy when the probe is adjacent to the lesion on radial endobronchial ultrasound: a multicenter retrospective observational study.
Tomoya Baba, Takayasu Ito, Tadasuke Ikenouchi, Yasushi Makino, Fumie Kinoshita

Jpn J Clin Oncol· October 2025

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How Does the Diagnostic Effectiveness of Transbronchial Needle Aspiration/Transbronchial Biopsy With Radial Endobronchial Ultrasound for the Diagnosis of Peripheral Pulmonary Lesions Differ With and Without a Guide Sheath?
Takayasu Ito, Basile Chretien, Kazuki Nishida, Hayata Kimura, Tomoya Baba

J Bronchology Interv Pulmonol· October 2025

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Dissemination of local sub-variants of SARS-CoV-2 detected by detailed mutation analysis in wastewater-based epidemiology.
Ryo Honda, Takashi Abe, Tomoya Baba, Yui Araki, Tomohiro Kuroita

PLoS One· May 2025

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Bronchial occlusion with endobronchial Watanabe spigots using a two-scope technique for massive haemoptysis.
Tomoya Baba, Takayasu Ito, Yoshiki Sato, Shunsaku Hayai, Junji Koyama

Respirol Case Rep· June 2024

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Durvalumab plus carboplatin-etoposide treatment in a patient with small-cell lung cancer on hemodialysis: a case report and literature review.
Futoshi Ushijima, Tetsunari Hase, Yuki Yamashita, Hangsoo Kim, Tomoya Shimokata, Tomoya Baba

Int Cancer Conf J· April 2024

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Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces.
Yuh Shiwa, Tomoya Baba, Maria A Sierra, JangKeun Kim, Christopher E Mason

BMC Res Notes· July 2023

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DOCK2 is involved in the host genetics and biology of severe COVID-19.
Ho Namkoong, Ryuya Edahiro, Tomomi Takano, Hiroshi Nishihara, Yuya Shirai, Rie Baba, Hiroaki Baba, Tomoya Baba

Nature· September 2022

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Epidermal growth factor receptor mutation-positive advanced lung adenocarcinoma presenting with acute respiratory failure diagnosed by thin bronchoscope through transnasal route under high-concentration oxygen mask.
Takayasu Ito, Yasushi Makino, Shuko Mashimo, Tomoya Baba, Ryo Otsuki

Respirol Case Rep· September 2022

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The whole blood transcriptional regulation landscape in 465 COVID-19 infected samples from Japan COVID-19 Task Force.
Qingbo S Wang, Ryuya Edahiro, Ho Namkoong, Takanori Hasegawa, Yuya Shirai, Rie Baba, Hiroaki Baba, Tomoya Baba

Nat Commun· August 2022

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Highly Precise and Sensitive Polymerase Chain Reaction Using Mesoporous Silica-Immobilized Enzymes.
Shun-Ichi Matsuura, Tomoya Baba, Takuji Ikeda, Katsutoshi Yamamoto, Tatsuo Tsunoda

ACS Appl Mater Interfaces· July 2022

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Batch-Learning Self-Organizing Map Identifies Horizontal Gene Transfer Candidates and Their Origins in Entire Genomes.
Takashi Abe, Yu Akazawa, Atsushi Toyoda, Hironori Niki, Tomoya Baba

Front Microbiol· July 2020

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Genome sequence and overview of Shr3 in the eighth class of the phylum .
Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Tomoya Baba, Miyuki Nishijima

Stand Genomic Sci· December 2016

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Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water.
Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Hiroyo Nishide, Ikuo Uchiyama, Tomoya Baba

Genome Announc· June 2016

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Aurantimicrobium minutum gen. nov., sp. nov., a novel ultramicrobacterium of the family Microbacteriaceae, isolated from river water.
Ryosuke Nakai, Tomoya Baba, Hironori Niki, Miyuki Nishijima, Takeshi Naganuma

Int J Syst Evol Microbiol· November 2015

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Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12.
Hirotada Mori, Tomoya Baba, Katsushi Yokoyama, Rikiya Takeuchi, Wataru Nomura

Methods Mol Biol· October 2015

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Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.
Yukako Tohsato, Tomoya Baba, Yusaku Mazaki, Masahiro Ito, Barry L Wanner

J Bioinform Comput Biol· December 2010

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Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments.
Eiji Aono, Tomoya Baba, Takeshi Ara, Tatsunari Nishi, Tomoko Nakamichi, Miki Baba

Mol Biosyst· July 2010

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Glutathione production by efficient ATP-regenerating Escherichia coli mutants.
Kiyotaka Y Hara, Natsuka Shimodate, Yasutaka Hirokawa, Mikito Ito, Tomoya Baba

FEMS Microbiol Lett· August 2009

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Systematic genome-wide scanning for genes involved in ATP generation in Escherichia coli.
Kiyotaka Y Hara, Natsuka Shimodate, Mikito Ito, Tomoya Baba, Hirotada Mori

Metab Eng· January 2009

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Genome structure of the legume, Lotus japonicus.
Shusei Sato, Yasukazu Nakamura, Takakazu Kaneko, Erika Asamizu, Tomohiko Kato, Tomoya Baba

DNA Res· August 2008

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The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12.
Tomoya Baba, Hirotada Mori

Methods Mol Biol· June 2008

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The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.
Tomoya Baba, Hsuan-Cheng Huan, Kirill Datsenko, Barry L Wanner, Hirotada Mori

Methods Mol Biol· June 2008

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Multiple high-throughput analyses monitor the response of E. coli to perturbations.
Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga

Science· April 2007

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High-throughput fluorescence labelling of full-length cDNA products based on a reconstituted translation system.
Yuko Kawahashi, Nobuhide Doi, Yo Oishi, Chizuru Tsuda, Hideaki Takashima, Tomoya Baba

J Biochem· January 2007

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Escherichia coli proteome chips for detecting protein-protein interactions.
Yo Oishi, Shuichi Yunomura, Yuko Kawahashi, Nobuhide Doi, Hideaki Takashima, Tomoya Baba

Proteomics· December 2006

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