Publications by authors named "Ben Jordan"

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IsoBayes: a Bayesian approach for single-isoform proteomics inference.
Jordy Bollon, Michael R Shortreed, Erin Jeffery, Ben T Jordan, Rachel Miller

Bioinformatics· August 2025

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Systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms using PTM-POSE.
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Ben T Jordan, Kristen M Naegle

Cell Syst· July 2025

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: a Bayesian approach for single-isoform proteomics inference.
Jordy Bollon, Michael R Shortreed, Ben T Jordan, Rachel Miller, Erin Jeffery

bioRxiv· May 2025

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Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity.
Mayank Murali, Jamie Saquing, Senbao Lu, Ziyang Gao, Emily F Watts, Ben Jordan

Genome Res· April 2025

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Systematic analysis of the effects of splicing on the diversity of post-translational modifications in protein isoforms using PTM-POSE.
Sam Crowl, Maeve Bella Coleman, Andrew Chaphiv, Ben T Jordan, Kristen M Naegle

bioRxiv· March 2025

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IS-PRM-Based Peptide Targeting Informed by Long-Read Sequencing for Alternative Proteome Detection.
Jennifer A Korchak, Erin D Jeffery, Saikat Bandyopadhyay, Ben T Jordan, Micah D Lehe

J Am Soc Mass Spectrom· November 2024

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Genomic characterization of cervical lymph node metastases in papillary thyroid carcinoma following the Chornobyl accident.
Lindsay M Morton, Olivia W Lee, Danielle M Karyadi, Tetiana I Bogdanova, Chip Stewart, Ben Jordan

Nat Commun· June 2024

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IS-PRM-based peptide targeting informed by long-read sequencing for alternative proteome detection.
Jennifer A Korchak, Erin D Jeffery, Saikat Bandyopadhyay, Ben T Jordan, Micah Lehe

bioRxiv· April 2024

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Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity.
Mayank Murali, Jamie Saquing, Senbao Lu, Ziyang Gao, Ben Jordan

bioRxiv· March 2024

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Using watershed characteristics to enhance fecal source identification.
John J Hart, Megan N Jamison, James N McNair, Sean A Woznicki, Ben Jordan

J Environ Manage· June 2023

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EmbryoNet: using deep learning to link embryonic phenotypes to signaling pathways.
Daniel Čapek, Matvey Safroshkin, Hernán Morales-Navarrete, Nikan Toulany, Grigory Arutyunov, Ben Jordan

Nat Methods· June 2023

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Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.
Vladimir B C de Souza, Ben T Jordan, Elizabeth Tseng, Elizabeth A Nelson, Karen K Hirschi

Genome Biol· April 2023

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KSTAR: An algorithm to predict patient-specific kinase activities from phosphoproteomic data.
Sam Crowl, Ben T Jordan, Hamza Ahmed, Cynthia X Ma, Kristen M Naegle

Nat Commun· July 2022

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Enhanced protein isoform characterization through long-read proteogenomics.
Rachel M Miller, Ben T Jordan, Madison M Mehlferber, Erin D Jeffery, Christina Chatzipantsiou

Genome Biol· March 2022

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Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
Madison M Mehlferber, Erin D Jeffery, Jamie Saquing, Ben T Jordan, Leon Sheynkman

RNA Biol· January 2022

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Full-length transcript sequencing of human and mouse cerebral cortex identifies widespread isoform diversity and alternative splicing.
Szi Kay Leung, Aaron R Jeffries, Isabel Castanho, Ben T Jordan, Karen Moore

Cell Rep· November 2021

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Climate research priorities for policy-makers, practitioners, and scientists in Georgia, USA.
Murray A Rudd, Althea F P Moore, Daniel Rochberg, Lisa Bianchi-Fossati, Marilyn A Brown, Ben Jordan

Environ Manage· August 2018

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Quantitative diffusion measurements using the open-source software PyFRAP.
Alexander Bläßle, Gary Soh, Theresa Braun, David Mörsdorf, Hannes Preiß, Ben M Jordan

Nat Commun· April 2018

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Differential diffusivity of Nodal and Lefty underlies a reaction-diffusion patterning system.
Patrick Müller, Katherine W Rogers, Ben M Jordan, Joon S Lee, Drew Robson

Science· May 2012

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