Publications by authors named "Benjamin A Barad"

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MidSurfer: A Parameter-Free Approach for Mid-Surface Extraction From Segmented Volumetric Data.
Eva Bones, Dawar Khan, Ciril Bohak, Benjamin A Barad, Danielle A Grotjahn

IEEE Comput Graph Appl· October 2025

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Surface morphometrics reveals local membrane thickness variation in organellar subcompartments.
Michaela Medina, Ya-Ting Chang, Hamidreza Rahmani, Daniel Fuentes, Benjamin A Barad

bioRxiv· May 2025

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Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import.
Ya-Ting Chang, Benjamin A Barad, Juliette Hamid, Hamidreza Rahmani, Brian M Zid

J Cell Biol· April 2025

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Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import.
Ya-Ting Chang, Benjamin A Barad, Hamidreza Rahmani, Brian M Zid, Danielle A Grotjahn

bioRxiv· July 2024

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Overcoming resolution attenuation during tilted cryo-EM data collection.
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Benjamin A Barad

Nat Commun· January 2024

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Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography.
Alexander M Wolff, Eriko Nango, Iris D Young, Aaron S Brewster, Minoru Kubo, Benjamin A Barad

Nat Chem· November 2023

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Nanoscale details of mitochondrial constriction revealed by cryoelectron tomography.
Shrawan Kumar Mageswaran, Danielle Ann Grotjahn, Xiangrui Zeng, Benjamin Asher Barad, Michaela Medina

Biophys J· September 2023

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Overcoming Resolution Attenuation During Tilted Cryo-EM Data Collection.
Sriram Aiyer, Philip R Baldwin, Shi Min Tan, Zelin Shan, Juntaek Oh, Benjamin A Barad

bioRxiv· July 2023

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Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline.
Benjamin A Barad, Michaela Medina, Daniel Fuentes, R Luke Wiseman, Danielle A Grotjahn

J Cell Biol· April 2023

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CellPAINT: Turnkey Illustration of Molecular Cell Biology.
Adam Gardner, Ludovic Autin, Daniel Fuentes, Martina Maritan, Benjamin A Barad

Front Bioinform· March 2021

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Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.
Catherine L Lawson, Andriy Kryshtafovych, Paul D Adams, Pavel V Afonine, Matthew L Baker, Benjamin A Barad

Nat Methods· February 2021

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Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates.
Benjamin A Barad, Lin Liu, Roberto E Diaz, Ralp Basilio, Steven J Van Dyken

Protein Sci· April 2020

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Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.
Michael C Thompson, Benjamin A Barad, Alexander M Wolff, Hyun Sun Cho, Friedrich Schotte

Nat Chem· November 2019

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Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.
Nilanjana Chatterjee, Evangelos Pazarentzos, Manasi K Mayekar, Philippe Gui, David V Allegakoen, Benjamin A Barad

Cell Rep· August 2019

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XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.
Jessica L Thomaston, Rahel A Woldeyes, Takanori Nakane, Ayumi Yamashita, Tomoyuki Tanaka, Benjamin A Barad

Proc Natl Acad Sci U S A· December 2017

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Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta.
Ray Yu-Ruei Wang, Yifan Song, Benjamin A Barad, Yifan Cheng, James S Fraser

Elife· September 2016

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Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting.
David Mavor, Kyle Barlow, Samuel Thompson, Benjamin A Barad, Alain R Bonny

Elife· April 2016

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EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio

Nat Methods· October 2015

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