Publications by authors named "Benjamin A Shoemaker"

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PubChem 2025 update.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Benjamin A Shoemaker

Nucleic Acids Res· January 2025

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Adding open spectral data to MassBank and PubChem using open source tools to support non-targeted exposomics of mixtures.
Anjana Elapavalore, Todor Kondić, Randolph R Singh, Benjamin A Shoemaker, Paul A Thiessen

Environ Sci Process Impacts· November 2023

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PubChem 2023 update.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Benjamin A Shoemaker

Nucleic Acids Res· January 2023

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The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry.
Hiba Mohammed Taha, Reza Aalizadeh, Nikiforos Alygizakis, Jean-Philippe Antignac, Hans Peter H Arp, Benjamin A Shoemaker

Environ Sci Eur· October 2022

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PubChem in 2021: new data content and improved web interfaces.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Benjamin A Shoemaker

Nucleic Acids Res· January 2021

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Finding Potential Multitarget Ligands Using PubChem.
Sunghwan Kim, Benjamin A Shoemaker, Evan E Bolton, Stephen H Bryant

Methods Mol Biol· April 2019

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PubChem 2019 update: improved access to chemical data.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Benjamin A Shoemaker

Nucleic Acids Res· January 2019

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Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows.
Alexander Goncearenco, Minghui Li, Franco L Simonetti, Benjamin A Shoemaker, Anna R Panchenko

Methods Mol Biol· April 2018

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PubChem BioAssay: 2017 update.
Yanli Wang, Stephen H Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A Shoemaker

Nucleic Acids Res· January 2017

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Literature information in PubChem: associations between PubChem records and scientific articles.
Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Bo Yu, Benjamin A Shoemaker

J Cheminform· June 2016

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Balancing Protein Stability and Activity in Cancer: A New Approach for Identifying Driver Mutations Affecting CBL Ubiquitin Ligase Activation.
Minghui Li, Stephen C Kales, Ke Ma, Benjamin A Shoemaker, Juan Crespo-Barreto

Cancer Res· February 2016

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PubChem Substance and Compound databases.
Sunghwan Kim, Paul A Thiessen, Evan E Bolton, Jie Chen, Gang Fu, Benjamin A Shoemaker

Nucleic Acids Res· January 2016

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Coverage of protein domain families with structural protein-protein interactions: current progress and future trends.
Alexander Goncearenco, Benjamin A Shoemaker, Dachuan Zhang, Alexey Sarychev, Anna R Panchenko

Prog Biophys Mol Biol· September 2015

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Structural Perspectives on the Evolutionary Expansion of Unique Protein-Protein Binding Sites.
Alexander Goncearenco, Alexey K Shaytan, Benjamin A Shoemaker, Anna R Panchenko

Biophys J· September 2015

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Cancer missense mutations alter binding properties of proteins and their interaction networks.
Hafumi Nishi, Manoj Tyagi, Shaolei Teng, Benjamin A Shoemaker, Kosuke Hashimoto

PLoS One· January 2014

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PubChem BioAssay: 2014 update.
Yanli Wang, Tugba Suzek, Jian Zhang, Jiyao Wang, Siqian He, Benjamin A Shoemaker

Nucleic Acids Res· January 2014

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Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamics.
Minghui Li, Benjamin A Shoemaker, Ratna R Thangudu, Joan D Ferraris, Maurice B Burg

J Phys Chem B· October 2013

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Large-scale mapping of human protein interactome using structural complexes.
Manoj Tyagi, Kosuke Hashimoto, Benjamin A Shoemaker, Stefan Wuchty, Anna R Panchenko

EMBO Rep· March 2012

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Intrinsic protein disorder in human pathways.
Jessica H Fong, Benjamin A Shoemaker, Anna R Panchenko

Mol Biosyst· January 2012

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IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
Benjamin A Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R Thangudu, Jessica H Fong

Nucleic Acids Res· January 2012

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PubChem's BioAssay Database.
Yanli Wang, Jewen Xiao, Tugba O Suzek, Jian Zhang, Jiyao Wang, Benjamin A Shoemaker

Nucleic Acids Res· January 2012

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Knowledge-based annotation of small molecule binding sites in proteins.
Ratna R Thangudu, Manoj Tyagi, Benjamin A Shoemaker, Stephen H Bryant, Anna R Panchenko

BMC Bioinformatics· July 2010

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Evolution of protein binding modes in homooligomers.
Judith E Dayhoff, Benjamin A Shoemaker, Stephen H Bryant, Anna R Panchenko

J Mol Biol· January 2010

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ComSin: database of protein structures in bound (complex) and unbound (single) states in relation to their intrinsic disorder.
Michail Yu Lobanov, Benjamin A Shoemaker, Sergiy O Garbuzynskiy, Jessica H Fong, Anna R Panchenko

Nucleic Acids Res· January 2010

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An overview of the PubChem BioAssay resource.
Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A Shoemaker

Nucleic Acids Res· January 2010

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