Publications by authors named "Tiejun Cheng"

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Summarizing relationships between chemicals, genes, proteins, and diseases in PubChem using analysis of their co-occurrences in patents.
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Sunghwan Kim, Paul A Thiessen

J Cheminform· December 2025

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A resource description framework (RDF) model of named entity co-occurrences in biomedical literature and its integration with PubChemRDF.
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu

J Cheminform· May 2025

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Glycoscience data content in the NCBI Glycans and PubChem.
Sunghwan Kim, Jian Zhang, Tiejun Cheng, Qingliang Li, Evan E Bolton

Anal Bioanal Chem· February 2025

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PubChem 2025 update.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He

Nucleic Acids Res· January 2025

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Can Small Molecules Provide Clues on Disease Progression in Cerebrospinal Fluid from Mild Cognitive Impairment and Alzheimer's Disease Patients?
Begoña Talavera Andújar, Arnaud Mary, Carmen Venegas, Tiejun Cheng, Leonid Zaslavsky

Environ Sci Technol· March 2024

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Bridging glycoinformatics and cheminformatics: integration efforts between GlyCosmos and PubChem.
Tiejun Cheng, Tamiko Ono, Masaaki Shiota, Issaku Yamada, Kiyoko F Aoki-Kinoshita

Glycobiology· June 2023

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PubChem 2023 update.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He

Nucleic Acids Res· January 2023

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Studying the Parkinson's disease metabolome and exposome in biological samples through different analytical and cheminformatics approaches: a pilot study.
Begoña Talavera Andújar, Dagny Aurich, Velma T E Aho, Randolph R Singh, Tiejun Cheng

Anal Bioanal Chem· October 2022

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The NORMAN Suspect List Exchange (NORMAN-SLE): facilitating European and worldwide collaboration on suspect screening in high resolution mass spectrometry.
Hiba Mohammed Taha, Reza Aalizadeh, Nikiforos Alygizakis, Jean-Philippe Antignac, Hans Peter H Arp, Tiejun Cheng

Environ Sci Eur· October 2022

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PubChem Protein, Gene, Pathway, and Taxonomy Data Collections: Bridging Biology and Chemistry through Target-Centric Views of PubChem Data.
Sunghwan Kim, Tiejun Cheng, Siqian He, Paul A Thiessen, Qingliang Li

J Mol Biol· June 2022

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Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases.
Parul Gupta, Sushma Naithani, Justin Preece, Sunghwan Kim, Tiejun Cheng

Methods Mol Biol· March 2022

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iCn3D: From Web-Based 3D Viewer to Structural Analysis Tool in Batch Mode.
Jiyao Wang, Philippe Youkharibache, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Tiejun Cheng, Zhiyu Cheng

Front Mol Biosci· February 2022

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Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen.
Rahi Navelkar, Gareth Owen, Venkatesh Mutherkrishnan, Paul Thiessen, Tiejun Cheng

Glycobiology· December 2021

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Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem.
Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim

Front Res Metr Anal· July 2021

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PubChem in 2021: new data content and improved web interfaces.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He

Nucleic Acids Res· January 2021

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Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin L Elser, Tiejun Cheng

Nucleic Acids Res· January 2020

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PUG-View: programmatic access to chemical annotations integrated in PubChem.
Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte

J Cheminform· August 2019

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PubChem 2019 update: improved access to chemical data.
Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He

Nucleic Acids Res· January 2019

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An update on PUG-REST: RESTful interface for programmatic access to PubChem.
Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Bo Yu, Evan E Bolton

Nucleic Acids Res· July 2018

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Large-Scale Prediction of Drug-Target Interaction: a Data-Centric Review.
Tiejun Cheng, Ming Hao, Takako Takeda, Stephen H Bryant, Yanli Wang

AAPS J· September 2017

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PubChem BioAssay: A Decade's Development toward Open High-Throughput Screening Data Sharing.
Yanli Wang, Tiejun Cheng, Stephen H Bryant

SLAS Discov· July 2017

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Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites.
Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H Bryant, Yanli Wang

Bioinformatics· June 2017

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Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge.
Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H Bryant, Yanli Wang

J Cheminform· March 2017

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PubChem BioAssay: 2017 update.
Yanli Wang, Stephen H Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte

Nucleic Acids Res· January 2017

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Literature information in PubChem: associations between PubChem records and scientific articles.
Sunghwan Kim, Paul A Thiessen, Tiejun Cheng, Bo Yu, Benjamin A Shoemaker

J Cheminform· June 2016

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