Publications by authors named "Benjamin Bowen"

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Defective Notch1 signaling in endothelial cells drives pathogenesis in a mouse model of Adams-Oliver syndrome.
Alyssa F Solano, Kristina Preusse, Brittany Cain, Rebecca Hotz, Parthav Gavini, Benjamin Bowen

J Clin Invest· December 2025

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Decomposition causes short-term increases in functional molecular diversity of dissolved organic matter.
Rachelle E Davenport, Marie E Kroeger, Nikoli Tolić, Jason G Toyoda, Rosalie K Chu, Benjamin P Bowen

Nat Commun· December 2025

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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants.
Peter F Andeer, Petrus H Zwart, Daniela Ushizima, Marcus M Noack, Lloyd T Cornmesser, Benjamin P Bowen

Front Plant Sci· December 2025

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Utilizing pharmacists to bridge gaps in contraceptive care: New Mexico as a case study.
Abigail Leszczynski, Benjamin Bowen, Charlese P Schultz, Alexandra Herman, Kelsea Gallegos Aragon

J Am Pharm Assoc (2003)· November 2025

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A multi-omic characterization of the physiological responses to salt stress in Scenedesmus obliquus UTEX393.
Colin P S Kruse, Sara Calhoun, Bishoy Kamel, Scott J Edmundson, Omar Holguin, Benjamin Bowen

Commun Biol· November 2025

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Enrichment of root-associated Streptomyces strains in response to drought is driven by diverse functional traits and does not predict beneficial effects on plant growth.
Citlali Fonseca-Garcia, Dean Pettinga, Daniel Caddell, Hannah Ploemacher, Katherine Louie, Benjamin P Bowen

PLoS Biol· November 2025

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Author Correction: A universal language for finding mass spectrometry data patterns.
Tito Damiani, Alan K Jarmusch, Allegra T Aron, Daniel Petras, Vanessa V Phelan, Benjamin P Bowen

Nat Methods· September 2025

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Increasing the Scale of the Mass Spectrometry Query Language Compendium with Explainable AI.
Thomas V Harwood, Mingxun Wang, Trent R Northen, Benjamin P Bowen

Anal Chem· September 2025

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Breaking the reproducibility barrier with standardized protocols for plant-microbiome research.
Vlastimil Novak, Peter F Andeer, Eoghan King, Jacob Calabria, Connor Fitzpatrick, Benjamin P Bowen

PLoS Biol· September 2025

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Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.
Mario E E Franco, Megan N Nickerson, Benjamin P Bowen, Katherine Louie, Trent R Northen

mSystems· July 2025

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Correction: Green microalga conserves substrate uptake pattern but changes their metabolic uses across trophic transition.
Yuntao Hu, Nakian Kim, Melissa S Roth, Katherine B Louie, Suzanne M Kosina, Benjamin P Bowen

Front Microbiol· July 2025

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A universal language for finding mass spectrometry data patterns.
Tito Damiani, Alan K Jarmusch, Allegra T Aron, Daniel Petras, Vanessa V Phelan, Benjamin P Bowen

Nat Methods· June 2025

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Enabling pan-repository reanalysis for big data science of public metabolomics data.
Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O'Donovan, Benjamin P Bowen

Nat Commun· May 2025

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Enzymatic cleavage of model lignin dimers depends on pH, enzyme, and bond type.
Jenny R Onley, Kshitiz Gupta, Markus de Raad, Benjamin P Bowen, Stephen Tan

Sci Rep· March 2025

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Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways.
Lummy Maria Oliveira Monteiro, Carlos Del Cerro, Teeratas Kijpornyongpan, Allison Yaguchi, Anna Bennett, Benjamin P Bowen

Commun Biol· February 2025

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Bacterial and fungal composition and exometabolites control the development and persistence of soil water repellency.
Emily N Boak, Benjamin P Bowen, Katherine B Louie, Trent R Northen, Marie E Kroeger

ISME Commun· January 2025

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Metabolites from intact phage-infected Synechococcus chemotactically attract heterotrophic marine bacteria.
Richard J Henshaw, Jonathan Moon, Michael R Stehnach, Benjamin P Bowen, Suzanne M Kosina

Nat Microbiol· December 2024

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Green microalga conserves substrate uptake pattern but changes their metabolic uses across trophic transition.
Yuntao Hu, Nakian Kim, Melissa S Roth, Katherine B Louie, Suzanne M Kosina, Benjamin P Bowen

Front Microbiol· November 2024

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Engineered reduction of S-adenosylmethionine alters lignin in sorghum.
Yang Tian, Yu Gao, Halbay Turumtay, Emine Akyuz Turumtay, Yen Ning Chai, Benjamin P Bowen

Biotechnol Biofuels Bioprod· October 2024

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Expression of dehydroshikimate dehydratase in poplar induces transcriptional and metabolic changes in the phenylpropanoid pathway.
Emine Akyuz Turumtay, Halbay Turumtay, Yang Tian, Chien-Yuan Lin, Yen Ning Chai, Benjamin P Bowen

J Exp Bot· August 2024

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Nutrient and moisture limitations reveal keystone metabolites linking rhizosphere metabolomes and microbiomes.
Nameer R Baker, Kateryna Zhalnina, Mengting Yuan, Don Herman, Javier A Ceja-Navarro, Benjamin P Bowen

Proc Natl Acad Sci U S A· August 2024

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plantMASST - Community-driven chemotaxonomic digitization of plants.
Paulo Wender P Gomes, Helena Mannochio-Russo, Robin Schmid, Simone Zuffa, Tito Damiani, Benjamin P Bowen

bioRxiv· May 2024

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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments.
Christopher Schadt, Stanton Martin, Alyssa Carrell, Allison Fortner, Dan Hopp, Benjamin Bowen

Sci Data· April 2024

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The Exometabolome of in Contact with Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones.
Oseias R Feitosa-Junior, Andrea Lubbe, Suzanne M Kosina, Joaquim Martins-Junior, Deibs Barbosa, Benjamin P Bowen

Metabolites· January 2024

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Temporal dynamics in a red alga dominated geothermal feature in Yellowstone National Park.
Timothy G Stephens, Julia Van Etten, Timothy McDermott, William Christian, Martha Chaverra, Benjamin P Bowen

ISME Commun· January 2024

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