Publications by authors named "Benjamin Callahan"

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Guidelines for preventing and reporting contamination in low-biomass microbiome studies.
Noah Fierer, Pok Man Leung, Rachael Lappan, Raphael Eisenhofer, Francesco Ricci, Benjamin J Callahan

Nat Microbiol· July 2025

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A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Ali Hakimzadeh, Alejandro Abdala Asbun, Davide Albanese, Maria Bernard, Dominik Buchner, Benjamin Callahan

Mol Ecol Resour· July 2024

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diversity and ecology in pregnancy and preterm birth.
Hanna L Berman, Daniela S Aliaga Goltsman, Megan Anderson, David A Relman, Benjamin J Callahan

mSystems· June 2024

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Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella.
Jessie L Maier, Craig Gin, Benjamin Callahan, Emma K Sheriff, Breck A Duerkop

PLoS Pathog· June 2024

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Standards for fecal microbiota transplant: Tools and therapeutic advances.
Ilia Belotserkovsky, Lisa M Stabryla, Monique Hunter, Jessica Allegretti, Benjamin J Callahan

Biologicals· May 2024

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Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing.
Dmitry Grinevich, Lyndy Harden, Siddhartha Thakur, Benjamin Callahan

mSystems· March 2024

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The development of non-destructive sampling methods of parchment skins for genetic species identification.
Melissa Scheible, Timothy L Stinson, Matthew Breen, Benjamin J Callahan, Rachael Thomas

PLoS One· March 2024

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Impact of florfenicol dosing regimen on the phenotypic and genotypic resistance of enteric bacteria in steers.
Jennifer Halleran, Hannah Sylvester, Megan Jacob, Benjamin Callahan, Ronald Baynes

Sci Rep· February 2024

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Longitudinal Analysis of Canine Oral Microbiome Using Whole Genome Sequencing in Aging Companion Dogs.
Ginger B Templeton, Gilad Fefer, Beth C Case, Jeff Roach, M Andrea Azcarate-Peril, Benjamin J Callahan

Animals (Basel)· December 2023

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Rookery through rehabilitation: Microbial community assembly in newborn harbour seals after maternal separation.
Alexandra D Switzer, Benjamin J Callahan, Elizabeth K Costello, Elisabeth M Bik, Christine Fontaine

Environ Microbiol· November 2023

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Microbiome analysis of bile from apparently healthy cats and cats with suspected hepatobiliary disease.
Tanner S Slead, Benjamin J Callahan, Megan E Schreeg, Gabriela S Seiler, Devorah M Stowe

J Vet Intern Med· November 2023

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Evaluation of SARS-CoV-2 identification methods through surveillance of companion animals in SARS-CoV-2-positive homes in North Carolina, March to December 2020.
Taylor E Gin, Elizabeth A Petzold, Diya M Uthappa, Coralei E Neighbors, Anna R Borough, Benjamin J Callahan

PeerJ· October 2023

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Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth.
Caizhi Huang, Craig Gin, Jennifer Fettweis, Betsy Foxman, Bizu Gelaye, Benjamin Callahan

BMC Biol· September 2023

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Serovar-level Identification of Bacterial Foodborne Pathogens From Full-length 16S rRNA Gene Sequencing.
Dmitry Grinevich, Lyndy Harden, Siddhartha Thakur, Benjamin J Callahan

bioRxiv· June 2023

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Gallbladder microbiota in healthy dogs and dogs with mucocele formation.
Jody L Gookin, Ashley N Hartley, Kathleen M Aicher, Kyle G Mathews, Rachel Cullen, Benjamin J Callahan

PLoS One· February 2023

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Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny.
Charlotte Manvell, Hanna Berman, Benjamin Callahan, Edward Breitschwerdt, William Swain

Parasit Vectors· October 2022

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Phylogeny-guided microbiome OTU-specific association test (POST).
Caizhi Huang, Benjamin J Callahan, Michael C Wu, Shannon T Holloway, Hayden Brochu

Microbiome· June 2022

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Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology.
Leho Tedersoo, Mads Albertsen, Sten Anslan, Benjamin Callahan

Appl Environ Microbiol· August 2021

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Ultra-accurate microbial amplicon sequencing with synthetic long reads.
Benjamin J Callahan, Dmitry Grinevich, Siddhartha Thakur, Michael A Balamotis, Tuval Ben Yehezkel

Microbiome· June 2021

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The role of the microbiome in host evolution.
Oren Kolodny, Benjamin J Callahan, Angela E Douglas

Philos Trans R Soc Lond B Biol Sci· September 2020

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Pathogen resistance may be the principal evolutionary advantage provided by the microbiome.
Michael R McLaren, Benjamin J Callahan

Philos Trans R Soc Lond B Biol Sci· September 2020

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Evaluation of fecal populations in dogs with idiopathic epilepsy: a pilot study.
Karen R Muñana, Megan E Jacob, Benjamin J Callahan

Anim Microbiome· May 2020

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Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers.
Derek M Foster, Megan E Jacob, Kyle A Farmer, Benjamin J Callahan, Casey M Theriot

PLoS One· March 2020

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Benjamin J Callahan

Nat Biotechnol· September 2019

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Consistent and correctable bias in metagenomic sequencing experiments.
Michael R McLaren, Amy D Willis, Benjamin J Callahan

Elife· September 2019

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