Publications by authors named "Benjamin Hillmann"

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Pre-transplant and longitudinal changes in faecal microbiome characteristics are associated with subsequent development of chronic graft-versus-host disease.
Najla El Jurdi, Shernan G Holtan, Andrea Hoeschen, Jessica Velguth, Benjamin Hillmann

Br J Haematol· October 2023

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Massive blood transfusion following older adult trauma: The effect of blood ratios on mortality.
Rae D Hohle, Jillian K Wothe, Benjamin M Hillmann, Christopher J Tignanelli, James V Harmon

Acad Emerg Med· December 2022

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Bacterial communities associated with wood rot fungi that use distinct decomposition mechanisms.
Irshad Ul Haq, Benjamin Hillmann, Molly Moran, Samuel Willard, Dan Knights

ISME Commun· March 2022

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Saliva Testing Is Accurate for Early-Stage and Presymptomatic COVID-19.
Abigail J Johnson, Shannon Zhou, Susan L Hoops, Benjamin Hillmann, Matthew Schomaker

Microbiol Spectr· September 2021

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SHOGUN: a modular, accurate and scalable framework for microbiome quantification.
Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Rob Knight

Bioinformatics· July 2020

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Gut microbiome signatures of nursing home residents carrying Enterobacteria producing extended-spectrum β-lactamases.
Quentin Le Bastard, Guillaume Chapelet, Gabriel Birgand, Benjamin M Hillmann, François Javaudin

Antimicrob Resist Infect Control· July 2020

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Benjamin Hillmann

Nat Biotechnol· September 2019

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Benjamin Hillmann

Nat Biotechnol· August 2019

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Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans.
Abigail J Johnson, Pajau Vangay, Gabriel A Al-Ghalith, Benjamin M Hillmann, Tonya L Ward

Cell Host Microbe· June 2019

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Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks.
Pajau Vangay, Benjamin M Hillmann, Dan Knights

Gigascience· May 2019

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An Increased Abundance of Clostridiaceae Characterizes Arthritis in Inflammatory Bowel Disease and Rheumatoid Arthritis: A Cross-sectional Study.
David A Muñiz Pedrogo, Jun Chen, Benjamin Hillmann, Patricio Jeraldo, Gabriel Al-Ghalith

Inflamm Bowel Dis· April 2019

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US Immigration Westernizes the Human Gut Microbiome.
Pajau Vangay, Abigail J Johnson, Tonya L Ward, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Benjamin M Hillmann

Cell· November 2018

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Evaluating the Information Content of Shallow Shotgun Metagenomics.
Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Daryl M Gohl

mSystems· November 2018

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CLOUD: a non-parametric detection test for microbiome outliers.
Emmanuel Montassier, Gabriel A Al-Ghalith, Benjamin Hillmann, Kimberly Viskocil, Amanda J Kabage

Microbiome· August 2018

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Fecal microbiota transplantation reverses antibiotic and chemotherapy-induced gut dysbiosis in mice.
Quentin Le Bastard, Tonya Ward, Dimitri Sidiropoulos, Benjamin M Hillmann, Chan Lan Chun

Sci Rep· April 2018

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SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control.
Gabriel A Al-Ghalith, Benjamin Hillmann, Kaiwei Ang, Robin Shields-Cutler, Dan Knights

mSystems· April 2018

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Stable Engraftment of Bifidobacterium longum AH1206 in the Human Gut Depends on Individualized Features of the Resident Microbiome.
María X Maldonado-Gómez, Inés Martínez, Francesca Bottacini, Amy O'Callaghan, Marco Ventura, Benjamin Hillmann

Cell Host Microbe· October 2016

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