Publications by authors named "Gabriel Al-Ghalith"

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Gut mycobiome maturation and its determinants during early childhood: a comparison of ITS2 amplicon and shotgun metagenomic sequencing approaches.
Timothy Heisel, Sara Gonia, Abrielle Dillon, Susan L Hoops, Gabriel A Al-Ghalith

Front Microbiol· May 2025

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Towards geospatially-resolved public-health surveillance via wastewater sequencing.
Braden T Tierney, Jonathan Foox, Krista A Ryon, Daniel Butler, Namita Damle

Nat Commun· September 2024

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Longitudinal multi-omics analysis of host microbiome architecture and immune responses during short-term spaceflight.
Braden T Tierney, JangKeun Kim, Eliah G Overbey, Krista A Ryon, Jonathan Foox, Gabriel A Al-Ghalith

Nat Microbiol· July 2024

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Skin surface biomarkers are associated with future development of atopic dermatitis in children with family history of allergic disease.
Takahiro Sato, Janet Nikolovski, Russell Gould, Imane Lboukili, Pierre-Francois Roux, Gabriel Al-Ghalith

Skin Res Technol· October 2023

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Functional response to a microbial synbiotic in the gastrointestinal system of children: a randomized clinical trial.
Braden T Tierney, James Versalovic, Alessio Fasano, Joseph F Petrosino, Bruno P Chumpitazi, Gabriel A Al-Ghalith

Pediatr Res· June 2023

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Capacity of a Microbial Synbiotic To Rescue the Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics.
Braden T Tierney, Pieter Van den Abbeele, Gabriel A Al-Ghalith, Lynn Verstrepen, Jonas Ghyselinck

Appl Environ Microbiol· March 2023

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in Non-Cystic Fibrosis Bronchiectasis: Prevalence and Genomic Basis of High Inoculum β-Lactam Resistance.
Alexandra K Mossman, Julianna Svishchuk, Barbara Jean M Waddell, Conrad S Izydorczyk, Peter T Buckley, Gabriel Al-Ghalith

Ann Am Thorac Soc· August 2022

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Distribution of Bacterial α1,3-Galactosyltransferase Genes in the Human Gut Microbiome.
Emmanuel Montassier, Gabriel A Al-Ghalith, Camille Mathé, Quentin Le Bastard, Venceslas Douillard

Front Immunol· November 2020

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SHOGUN: a modular, accurate and scalable framework for microbiome quantification.
Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Rob Knight

Bioinformatics· July 2020

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Wild primate microbiomes prevent weight gain in germ-free mice.
Dimitrios N Sidiropoulos, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Tonya L Ward, Abigail J Johnson

Anim Microbiome· May 2020

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Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Qiyun Zhu, Uyen Mai, Wayne Pfeiffer, Stefan Janssen, Francesco Asnicar, Gabriel A Al-Ghalith

Nat Commun· December 2019

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Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus).
Jonathan B Clayton, Robin R Shields-Cutler, Susan L Hoops, Gabriel A Al-Ghalith, John C M Sha

Am J Primatol· October 2019

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith

Nat Biotechnol· September 2019

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Gabriel A Al-Ghalith

Nat Biotechnol· August 2019

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Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans.
Abigail J Johnson, Pajau Vangay, Gabriel A Al-Ghalith, Benjamin M Hillmann, Tonya L Ward

Cell Host Microbe· June 2019

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An Increased Abundance of Clostridiaceae Characterizes Arthritis in Inflammatory Bowel Disease and Rheumatoid Arthritis: A Cross-sectional Study.
David A Muñiz Pedrogo, Jun Chen, Benjamin Hillmann, Patricio Jeraldo, Gabriel Al-Ghalith

Inflamm Bowel Dis· April 2019

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Urinary microbiome associated with chronic allograft dysfunction in kidney transplant recipients.
Jennifer F Wu, Amutha Muthusamy, Gabriel A Al-Ghalith, Dan Knights, Bin Guo

Clin Transplant· December 2018

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US Immigration Westernizes the Human Gut Microbiome.
Pajau Vangay, Abigail J Johnson, Tonya L Ward, Gabriel A Al-Ghalith, Robin R Shields-Cutler

Cell· November 2018

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Evaluating the Information Content of Shallow Shotgun Metagenomics.
Benjamin Hillmann, Gabriel A Al-Ghalith, Robin R Shields-Cutler, Qiyun Zhu, Daryl M Gohl

mSystems· November 2018

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High-Throughput Short Variable Region Sequencing to Assess Diversity in Fecal Samples From Birds.
Qian Zhang, Gabriel A Al-Ghalith, Mayumi Kobayashi, Takahiro Segawa, Mitsuto Maeda

Front Microbiol· September 2018

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CLOUD: a non-parametric detection test for microbiome outliers.
Emmanuel Montassier, Gabriel A Al-Ghalith, Benjamin Hillmann, Kimberly Viskocil, Amanda J Kabage

Microbiome· August 2018

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Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity.
Xue-Song Zhang, Jackie Li, Kimberly A Krautkramer, Michelle Badri, Thomas Battaglia, Gabriel A Al-Ghalith

Elife· July 2018

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Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model.
Jonathan B Clayton, Gabriel A Al-Ghalith, Ha Thang Long, Bui Van Tuan, Francis Cabana

Sci Rep· July 2018

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SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control.
Gabriel A Al-Ghalith, Benjamin Hillmann, Kaiwei Ang, Robin Shields-Cutler, Dan Knights

mSystems· April 2018

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Development of the Human Mycobiome over the First Month of Life and across Body Sites.
Tonya L Ward, Maria Gloria Dominguez-Bello, Tim Heisel, Gabriel Al-Ghalith, Dan Knights

mSystems· March 2018

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