Publications by authors named "Benjamin Kaehler"

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New insights from modelling studies and molecular dynamics simulations of the DI extracellular linker of the skeletal muscle sodium channel NaV1.4.
Anna Robinson, Elaine Tao, Teresa Neeman, Benjamin Kaehler, Ben Corry

Biopolymers· July 2023

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RESCRIPt: Reproducible sequence taxonomy reference database management.
Michael S Robeson, Devon R O'Rourke, Benjamin D Kaehler, Michal Ziemski, Matthew R Dillon

PLoS Comput Biol· November 2021

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Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops.
Matthew R Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Benjamin D Kaehler

PLoS Comput Biol· June 2021

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Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences.
Michal Ziemski, Treepop Wisanwanichthan, Nicholas A Bokulich, Benjamin D Kaehler

Front Microbiol· June 2021

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Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods.
Nicholas A Bokulich, Michal Ziemski, Michael S Robeson, Benjamin D Kaehler

Comput Struct Biotechnol J· December 2020

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Species abundance information improves sequence taxonomy classification accuracy.
Benjamin D Kaehler, Nicholas A Bokulich, Daniel McDonald, Rob Knight, J Gregory Caporaso

Nat Commun· October 2019

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Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Benjamin D Kaehler

Nat Biotechnol· September 2019

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian C Abnet, Benjamin D Kaehler

Nat Biotechnol· August 2019

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redbiom: a Rapid Sample Discovery and Feature Characterization System.
Daniel McDonald, Benjamin Kaehler, Antonio Gonzalez, Jeff DeReus, Gail Ackermann

mSystems· June 2019

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Did aculeate silk evolve as an antifouling material?
Tara D Sutherland, Alagacone Sriskantha, Trevor D Rapson, Benjamin D Kaehler, Gavin A Huttley

PLoS One· March 2019

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q2-sample-classifier: machine-learning tools for microbiome classification and regression.
Nicholas A Bokulich, Matthew R Dillon, Evan Bolyen, Benjamin D Kaehler, Gavin A Huttley

J Open Res Softw· October 2018

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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin.
Nicholas A Bokulich, Benjamin D Kaehler, Jai Ram Rideout, Matthew Dillon, Evan Bolyen

Microbiome· May 2018

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Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies.
Benjamin D Kaehler

J Theor Biol· May 2017

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Standard Codon Substitution Models Overestimate Purifying Selection for Nonstationary Data.
Benjamin D Kaehler, Von Bing Yap, Gavin A Huttley

Genome Biol Evol· January 2017

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Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins.
Jakkrawut Maitip, Holly E Trueman, Benjamin D Kaehler, Gavin A Huttley, Panuwan Chantawannakul

Insect Biochem Mol Biol· April 2015

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Genetic distance for a general non-stationary markov substitution process.
Benjamin D Kaehler, Von Bing Yap, Rongli Zhang, Gavin A Huttley

Syst Biol· March 2015

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