Publications by authors named "Benjamin Koch"

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Arabidopsis Produces Distinct Subpopulations of Extracellular Vesicles That Respond Differentially to Biotic Stress, Altering Growth and Infectivity of a Fungal Pathogen.
Benjamin L Koch, Brian D Rutter, M Lucía Borniego, Meenu Singla-Rastogi, Dillon M Gardner

J Extracell Vesicles· May 2025

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Predicting sepsis mortality into an era of pandrug-resistant E. coli through modeling.
Benjamin J Koch, Daniel E Park, Bruce A Hungate, Cindy M Liu, James R Johnson

Commun Med (Lond)· December 2024

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Growth rate as a link between microbial diversity and soil biogeochemistry.
Megan M Foley, Bram W G Stone, Tristan A Caro, Noah W Sokol, Benjamin J Koch

Nat Ecol Evol· November 2024

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Three-Dimensional Ultrastructure of Cotyledons Infected with .
Kamesh C Regmi, Suchismita Ghosh, Benjamin Koch, Ulla Neumann, Barry Stein

Mol Plant Microbe Interact· April 2024

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Transcriptomics of Marburg virus-infected primary proximal tubular cells reveals negative correlation of immune response and energy metabolism.
Benjamin Koch, Maximilian Filzmayer, Sammy Patyna, Nils Wetzstein, Sebastian Lampe

Virus Res· April 2024

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Influenza A virus replicates productively in primary human kidney cells and induces factors and mechanisms related to regulated cell death and renal pathology observed in virus-infected patients.
Benjamin Koch, Mahmoud Shehata, Christin Müller-Ruttloff, Shady A Gouda, Nils Wetzstein

Front Cell Infect Microbiol· April 2024

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Gut microbiome predictors of Escherichia coli sequence type 131 colonization and loss.
Daniel E Park, Maliha Aziz, Benjamin J Koch, Kelsey Roach, Connie Clabots

EBioMedicine· January 2024

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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment.
Abigayle Simpson, Elisha M Wood-Charlson, Montana Smith, Benjamin J Koch, Kathleen Beilsmith

Gigascience· January 2024

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Microbial growth under drought is confined to distinct taxa and modified by potential future climate conditions.
Dennis Metze, Jörg Schnecker, Alberto Canarini, Lucia Fuchslueger, Benjamin J Koch

Nat Commun· September 2023

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Clinical characteristics and outcome of Mycobacterium chimaera infections after cardiac surgery: systematic review and meta-analysis of 180 heater-cooler unit-associated cases.
Nils Wetzstein, Thomas A Kohl, Margo Diricks, Silvia Mas-Peiro, Tomas Holubec, Benjamin Koch

Clin Microbiol Infect· August 2023

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The predictive power of phylogeny on growth rates in soil bacterial communities.
Jeth Walkup, Chansotheary Dang, Rebecca L Mau, Michaela Hayer, Egbert Schwartz, Benjamin J Koch

ISME Commun· July 2023

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Occurrence of extrapulmonary tuberculosis is associated with geographical origin: spatial characteristics of the Frankfurt TB cohort 2013-2018.
Nils Wetzstein, Alena-Pauline Drummer, Annabelle Bockey, Eva Herrmann, Claus Philippe Küpper-Tetzel, Benjamin Koch

Infection· June 2023

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Using source-associated mobile genetic elements to identify zoonotic extraintestinal infections.
Cindy M Liu, Maliha Aziz, Daniel E Park, Zhenke Wu, Marc Stegger, Benjamin J Koch

One Health· June 2023

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Life history strategies among soil bacteria-dichotomy for few, continuum for many.
Bram W G Stone, Paul Dijkstra, Brianna K Finley, Raina Fitzpatrick, Megan M Foley, Benjamin J Koch

ISME J· April 2023

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Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota.
Cale O Seymour, Marike Palmer, Eric D Becraft, Ramunas Stepanauskas, Ariel D Friel, Benjamin J Koch

Nat Microbiol· April 2023

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Distinct Growth Responses of Tundra Soil Bacteria to Short-Term and Long-Term Warming.
Jeffrey R Propster, Egbert Schwartz, Michaela Hayer, Samantha Miller, Victoria Monsaint-Queeney, Benjamin J Koch

Appl Environ Microbiol· March 2023

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Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community.
Bram W Stone, Steven J Blazewicz, Benjamin J Koch, Paul Dijkstra, Michaela Hayer

Oecologia· March 2023

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Gliflozins Have an Anti-Inflammatory Effect on Renal Proximal Tubular Epithelial Cells in a Diabetic and Inflammatory Microenvironment In Vitro.
Benjamin Koch, Dominik C Fuhrmann, Ralf Schubert, Helmut Geiger, Thimoteus Speer

Int J Mol Sci· January 2023

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Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems.
Alex Greenlon, Ella Sieradzki, Olivier Zablocki, Benjamin J Koch, Megan M Foley

mSystems· December 2022

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Life and death in the soil microbiome: how ecological processes influence biogeochemistry.
Noah W Sokol, Eric Slessarev, Gianna L Marschmann, Alexa Nicolas, Steven J Blazewicz, Benjamin J Koch

Nat Rev Microbiol· July 2022

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Effects of Hypoxia on RNA Cargo in Extracellular Vesicles from Human Adipose-Derived Stromal/Stem Cells.
Benjamin Koch, Alec Geßner, Samira Farmand, Dominik C Fuhrmann, Andreas G Chiocchetti

Int J Mol Sci· July 2022

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Safety and efficacy of the Seraph® 100 Microbind® Affinity Blood Filter to remove bacteria from the blood stream: results of the first in human study.
Gabriele Eden, Julius J Schmidt, Stefan Büttner, Philipp Kümpers, Carsten Hafer, Benjamin Florian Koch

Crit Care· June 2022

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Proteomic landscape of SARS-CoV-2- and MERS-CoV-infected primary human renal epithelial cells.
Aneesha Kohli, Lucie Sauerhering, Sarah K Fehling, Kevin Klann, Helmut Geiger, Benjamin Koch

Life Sci Alliance· May 2022

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SARS-CoV-2 and human retroelements: a case for molecular mimicry?
Benjamin Florian Koch

BMC Genom Data· April 2022

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Impact of Moderna mRNA-1273 Booster Vaccine on Fully Vaccinated High-Risk Chronic Dialysis Patients after Loss of Humoral Response.
Sammy Patyna, Timon Eckes, Benjamin F Koch, Stephan Sudowe, Anke Oftring

Vaccines (Basel)· April 2022

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