Publications by authors named "Benjamin Oakes"

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Atypical Postpartum Psychosis and Neuropsychiatric Manifestations Coexisting With Global Cortical Atrophy.
Brandon J Hegele, Stephen A Zorc, Ugoma Onubogu, Benjamin Oakes, Peter Averkiou

Cureus· November 2025

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Spatial analysis of recurrent glioblastoma reveals perivascular niche organization.
Ugoma Onubogu, Chandler D Gatenbee, Sandhya Prabhakaran, Kelsey L Wolfe, Benjamin Oakes

JCI Insight· May 2024

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New Approaches for Targeting PCSK9: Small-Interfering Ribonucleic Acid and Genome Editing.
Reindert F Oostveen, Amit V Khera, Sekar Kathiresan, Erik S G Stroes, Kevin Fitzgerald, Benjamin L Oakes

Arterioscler Thromb Vasc Biol· July 2023

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Comprehensive deletion landscape of CRISPR-Cas9 identifies minimal RNA-guided DNA-binding modules.
Arik Shams, Sean A Higgins, Christof Fellmann, Thomas G Laughlin, Benjamin L Oakes

Nat Commun· September 2021

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The impact of tumor epithelial and microenvironmental heterogeneity on treatment responses in HER2+ breast cancer.
Michalina Janiszewska, Shayna Stein, Otto Metzger Filho, Jennifer Eng, Natalie L Kingston, Benjamin Oakes

JCI Insight· June 2021

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A yeast optogenetic toolkit (yOTK) for gene expression control in Saccharomyces cerevisiae.
Jidapas My An-Adirekkun, Cameron J Stewart, Stephanie H Geller, Michael T Patel, Justin Melendez, Benjamin L Oakes

Biotechnol Bioeng· March 2020

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Author Correction: Circularly permuted and PAM-modified Cas9 variants broaden the targeting scope of base editors.
Tony P Huang, Kevin T Zhao, Shannon M Miller, Nicole M Gaudelli, Benjamin L Oakes

Nat Biotechnol· July 2019

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Circularly permuted and PAM-modified Cas9 variants broaden the targeting scope of base editors.
Tony P Huang, Kevin T Zhao, Shannon M Miller, Nicole M Gaudelli, Benjamin L Oakes

Nat Biotechnol· June 2019

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Controlling CRISPR-Cas9 with ligand-activated and ligand-deactivated sgRNAs.
Kale Kundert, James E Lucas, Kyle E Watters, Christof Fellmann, Andrew H Ng, Benjamin L Oakes

Nat Commun· May 2019

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Author Correction: CasX enzymes comprise a distinct family of RNA-guided genome editors.
Jun-Jie Liu, Natalia Orlova, Benjamin L Oakes, Enbo Ma, Hannah B Spinner

Nature· April 2019

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CasX enzymes comprise a distinct family of RNA-guided genome editors.
Jun-Jie Liu, Natalia Orlova, Benjamin L Oakes, Enbo Ma, Hannah B Spinner

Nature· February 2019

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CRISPR-Cas9 Circular Permutants as Programmable Scaffolds for Genome Modification.
Benjamin L Oakes, Christof Fellmann, Harneet Rishi, Kian L Taylor, Shawn M Ren

Cell· January 2019

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A Systems-Based Risk Assessment Framework for Intentional Electromagnetic Interference (IEMI) on Critical Infrastructures.
Benjamin Donald Oakes, Lars-Göran Mattsson, Per Näsman, Andrés Alayón Glazunov

Risk Anal· June 2018

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Profiling of engineering hotspots identifies an allosteric CRISPR-Cas9 switch.
Benjamin L Oakes, Dana C Nadler, Avi Flamholz, Christof Fellmann, Brett T Staahl

Nat Biotechnol· June 2016

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Multi-reporter selection for the design of active and more specific zinc-finger nucleases for genome editing.
Benjamin L Oakes, Danny F Xia, Elizabeth F Rowland, Denise J Xu, Irina Ankoudinova

Nat Commun· January 2016

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Protein engineering of Cas9 for enhanced function.
Benjamin L Oakes, Dana C Nadler, David F Savage

Methods Enzymol· July 2015

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A systematic survey of the Cys2His2 zinc finger DNA-binding landscape.
Anton V Persikov, Joshua L Wetzel, Elizabeth F Rowland, Benjamin L Oakes, Denise J Xu

Nucleic Acids Res· February 2015

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Programmable RNA recognition and cleavage by CRISPR/Cas9.
Mitchell R O'Connell, Benjamin L Oakes, Samuel H Sternberg, Alexandra East-Seletsky, Matias Kaplan

Nature· December 2014

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Real-time optogenetic control of intracellular protein concentration in microbial cell cultures.
Justin Melendez, Michael Patel, Benjamin L Oakes, Ping Xu, Patrick Morton

Integr Biol (Camb)· March 2014

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Deep sequencing of large library selections allows computational discovery of diverse sets of zinc fingers that bind common targets.
Anton V Persikov, Elizabeth F Rowland, Benjamin L Oakes, Mona Singh, Marcus B Noyes

Nucleic Acids Res· February 2014

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Rapid synthesis and screening of chemically activated transcription factors with GFP-based reporters.
R Scott McIsaac, Benjamin L Oakes, David Botstein, Marcus B Noyes

J Vis Exp· November 2013

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Synthetic gene expression perturbation systems with rapid, tunable, single-gene specificity in yeast.
R Scott McIsaac, Benjamin L Oakes, Xin Wang, Krysta A Dummit, David Botstein

Nucleic Acids Res· February 2013

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Copper modulates the phenotypic response of activated BV2 microglia through the release of nitric oxide.
Alba Rossi-George, Chang-Jiang Guo, Benjamin L Oakes, Andrew J Gow

Nitric Oxide· December 2012

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