Publications by authors named "Benjamin Polacco"

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Author Correction: Brahma safeguards canalization of cardiac mesoderm differentiation.
Swetansu K Hota, Kavitha S Rao, Andrew P Blair, Ali Khalilimeybodi, Kevin M Hu, Benjamin J Polacco

Nature· December 2025

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Functional diversification of the cephalopod proteome by RNA-editing.
Jack M Moen, Alicia L Richards, Einar K Krogsaeter, Benjamin Polacco, Martin Gordon

bioRxiv· December 2025

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Integrative multi-omics analysis identifies influenza virus host factors.
Leah P Shriver, Benjamin J Polacco, Manon Eckhardt, Max W Chang, Carles Martínez-Romero

iScience· November 2025

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Inference of differential kinase interaction networks with KINference.
Nicolai Meyerhöfer, Nevan J Krogan, Benjamin J Polacco, David B Blumenthal

Bioinformatics· July 2025

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Malaria exposure remodels the plasma proteome of Ghanaian children.
Aisha M Mohammed, Charles Ochieng' Olwal, Andrea Fossati, Nancy K Nyakoe, Jacqueline M Fabius, Benjamin J Polacco

BMC Infect Dis· February 2025

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Protocol for mapping differential protein-protein interaction networks using affinity purification-mass spectrometry.
Prashant Kaushal, Manisha R Ummadi, Gwendolyn M Jang, Yennifer Delgado, Sara K Makanani, Benjamin Polacco

STAR Protoc· December 2024

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A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS.
Sami Nourreddine, Yesh Doctor, Amir Dailamy, Antoine Forget, Yi-Hung Lee, Benjamin Polacco

bioRxiv· November 2024

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Profiling the proximal proteome of the activated μ-opioid receptor.
Benjamin J Polacco, Braden T Lobingier, Emily E Blythe, Nohely Abreu, Prachi Khare

Nat Chem Biol· September 2024

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A proximity proteomics pipeline with improved reproducibility and throughput.
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley

Mol Syst Biol· August 2024

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Signaling Modulation Mediated by Ligand Water Interactions with the Sodium Site at μOR.
Rohini S Ople, Nokomis Ramos-Gonzalez, Qiongyu Li, Briana L Sobecks, Deniz Aydin, Benjamin J Polacco

ACS Cent Sci· August 2024

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Protein Interaction Map of APOBEC3 Enzyme Family Reveals Deamination-Independent Role in Cellular Function.
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Benjamin J Polacco

Mol Cell Proteomics· May 2024

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Mapping Differential Protein-Protein Interaction Networks using Affinity Purification Mass Spectrometry.
Prashant Kaushal, Manisha R Ummadi, Gwendolyn M Jang, Yennifer Delgado, Sara K Makanani, Benjamin Polacco

ArXiv· May 2024

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Predicted mechanistic impacts of human protein missense variants.
Jürgen Jänes, Marc Müller, Senthil Selvaraj, Diogo Manoel, James Stephenson, Benjamin Polacco

bioRxiv· May 2024

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A proximity proteomics pipeline with improved reproducibility and throughput.
Xiaofang Zhong, Qiongyu Li, Benjamin J Polacco, Trupti Patil, Aaron Marley

bioRxiv· April 2024

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A foundational atlas of autism protein interactions reveals molecular convergence.
Belinda Wang, Rasika Vartak, Yefim Zaltsman, Zun Zar Chi Naing, Kelsey M Hennick, Benjamin J Polacco

bioRxiv· February 2024

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Protein interaction map of APOBEC3 enzyme family reveals deamination-independent role in cellular function.
Gwendolyn M Jang, Arun Kumar Annan Sudarsan, Arzhang Shayeganmehr, Erika Prando Munhoz, Reanna Lao, Benjamin J Polacco

bioRxiv· February 2024

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De novo protein identification in mammalian sperm using in situ cryoelectron tomography and AlphaFold2 docking.
Zhen Chen, Momoko Shiozaki, Kelsey M Haas, Will M Skinner, Shumei Zhao, Benjamin J Polacco

Cell· November 2023

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SARS-CoV-2 variants evolve convergent strategies to remodel the host response.
Mehdi Bouhaddou, Ann-Kathrin Reuschl, Benjamin J Polacco, Lucy G Thorne, Manisha R Ummadi

Cell· October 2023

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Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis.
Thomas Kehrer, Anastasija Cupic, Chengjin Ye, Soner Yildiz, Mehdi Bouhaddou, Benjamin J Polacco

Cell Host Microbe· October 2023

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Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.
Kelsey M Haas, Michael J McGregor, Mehdi Bouhaddou, Benjamin J Polacco, Eun-Young Kim

Nat Commun· September 2023

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Quantitative Proteomic Analysis Reveals apoE4-Dependent Phosphorylation of the Actin-Regulating Protein VASP.
Zeynep Cakir, Samuel J Lord, Yuan Zhou, Gwendolyn M Jang, Benjamin J Polacco

Mol Cell Proteomics· May 2023

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Resistance to ATR Inhibitors Is Mediated by Loss of the Nonsense-Mediated Decay Factor UPF2.
Patrick C O'Leary, Huadong Chen, Yagmur U Doruk, Tess Williamson, Benjamin Polacco

Cancer Res· November 2022

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Impact of SARS-CoV-2 ORF6 and its variant polymorphisms on host responses and viral pathogenesis.
Thomas Kehrer, Anastasija Cupic, Chengjin Ye, Soner Yildiz, Mehdi Bouhhadou, Benjamin J Polacco

bioRxiv· November 2022

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Data-Independent Acquisition Protease-Multiplexing Enables Increased Proteome Sequence Coverage Across Multiple Fragmentation Modes.
Alicia L Richards, Kuei-Ho Chen, Damien B Wilburn, Erica Stevenson, Benjamin J Polacco

J Proteome Res· April 2022

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Brahma safeguards canalization of cardiac mesoderm differentiation.
Swetansu K Hota, Kavitha S Rao, Andrew P Blair, Ali Khalilimeybodi, Kevin M Hu, Benjamin J Polacco

Nature· February 2022

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