Publications by authors named "Benjamin Tully"

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Quantitative microbial taxonomy across particle size, depth, and oxygen concentration.
Paulina Huanca-Valenzuela, Clara A Fuchsman, Benjamin J Tully, Jason B Sylvan, Jacob A Cram

Front Microbiol· May 2025

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Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean.
Kristin M Yoshimura, Sunita R Shah Walter, Benjamin J Tully, Jennifer F Biddle

Environ Microbiol· February 2025

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Bacterial abundance and diversity in 64-74 Ma subseafloor igneous basement from the Louisville Seamount Chain.
Jason B Sylvan, Benjamin J Tully, Yuki Morono, Jeffrey C Alt, Sharon L Grim

mLife· December 2024

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Increasing transposase abundance with ocean depth correlates with a particle-associated lifestyle.
Juntao Zhong, Troy Osborn, Thais Del Rosario Hernández, Oleksandr Kyrysyuk, Benjamin J Tully

mSystems· March 2024

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Eukaryotic genomes from a global metagenomic data set illuminate trophic modes and biogeography of ocean plankton.
Harriet Alexander, Sarah K Hu, Arianna I Krinos, Maria Pachiadaki, Benjamin J Tully

mBio· December 2023

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Identification of microbial metabolic functional guilds from large genomic datasets.
Ryan Reynolds, Sangwon Hyun, Benjamin Tully, Jacob Bien, Naomi M Levine

Front Microbiol· June 2023

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Microbial Populations Are Shaped by Dispersal and Recombination in a Low Biomass Subseafloor Habitat.
Rika E Anderson, Elaina D Graham, Julie A Huber, Benjamin J Tully

mBio· August 2022

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Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean.
Lauren E Manck, Jiwoon Park, Benjamin J Tully, Alfonso M Poire, Randelle M Bundy

ISME J· February 2022

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Marine Dadabacteria exhibit genome streamlining and phototrophy-driven niche partitioning.
Elaina D Graham, Benjamin J Tully

ISME J· April 2021

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Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community.
Lauren M Seyler, Elizabeth Trembath-Reichert, Benjamin J Tully, Julie A Huber

ISME J· April 2021

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NCBI's Virus Discovery Codeathon: Building "FIVE" -The Federated Index of Viral Experiments API Index.
Joan Martí-Carreras, Alejandro Rafael Gener, Sierra D Miller, Anderson F Brito, Christiam E Camacho, Benjamin J Tully

Viruses· December 2020

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Biases in genome reconstruction from metagenomic data.
William C Nelson, Benjamin J Tully, Jennifer M Mobberley

PeerJ· October 2020

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MetaSanity: an integrated microbial genome evaluation and annotation pipeline.
Christopher J Neely, Elaina D Graham, Benjamin J Tully

Bioinformatics· August 2020

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Author Correction: A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge.
Julie L Meyer, Ulrike Jaekel, Benjamin J Tully, Brian T Glazer, C Geoffrey Wheat

Sci Rep· April 2020

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NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements.
Ryan Connor, Rodney Brister, Jan P Buchmann, Ward Deboutte, Rob Edwards, Benjamin Tully

Genes (Basel)· September 2019

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Genome Sequence of sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral.
Areli Lopez, Daniel Albino, Senay Beraki, Sondra Broomell, Ricardo Canela, Benjamin J Tully

Microbiol Resour Announc· September 2019

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Metabolic diversity within the globally abundant Marine Group II Euryarchaea offers insight into ecological patterns.
Benjamin J Tully

Nat Commun· January 2019

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Genome Sequence of sp. Strain HR-1, an Iron Reducer from the Lō'ihi Seamount, Hawai'i.
Hillary Smith, Karla Abuyen, Jason Tremblay, Pratixaben Savalia, Ileana Pérez-Rodríguez, Benjamin Tully

Genome Announc· May 2018

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Genome Sequence of sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer.
Christopher Neely, Charbel Bou Khalil, Alex Cervantes, Raquel Diaz, Angelica Escobar, Benjamin Tully

Genome Announc· February 2018

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A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer.
Benjamin J Tully, C Geoff Wheat, Brain T Glazer, Julie A Huber

ISME J· January 2018

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The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans.
Benjamin J Tully, Elaina D Graham, John F Heidelberg

Sci Data· January 2018

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290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology.
Benjamin J Tully, Rohan Sachdeva, Elaina D Graham, John F Heidelberg

PeerJ· July 2017

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Genome Sequence of sp. Strain EPR-M, a Deep-Sea Hydrothermal Vent Iron Reducer.
Benjamin Tully, Pratixaben Savalia, Karla Abuyen, Christina Baughan, Eric Romero

Genome Announc· June 2017

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BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation.
Elaina D Graham, John F Heidelberg, Benjamin J Tully

PeerJ· March 2017

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Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments.
Benjamin J Tully, John F Heidelberg

Appl Environ Microbiol· July 2016

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