Publications by authors named "Jacob A Cram"

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Quantitative microbial taxonomy across particle size, depth, and oxygen concentration.
Paulina Huanca-Valenzuela, Clara A Fuchsman, Benjamin J Tully, Jason B Sylvan, Jacob A Cram

Front Microbiol· May 2025

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Size-fractionated metagenomic depth profiles from two sulfidic stations in the Chesapeake Bay.
Clara A Fuchsman, Jacob A Cram, Marcel Huntemann, Robert Riley, Brian Foster

Microbiol Resour Announc· April 2025

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With a little help from my friends: importance of protist-protist interactions in structuring marine protistan communities in the San Pedro Channel.
Samantha J Gleich, Lisa Y Mesrop, Jacob A Cram, J L Weissman, Sarah K Hu

mSystems· February 2025

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Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay.
Jacob A Cram, Ashley Hollins, Alexandra J McCarty, Grace Martinez, Minming Cui

Environ Microbiol· January 2024

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Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth.
Clara A Fuchsman, David Garcia Prieto, Matthew D Hays, Jacob A Cram

PeerJ· March 2023

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NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data.
Samantha J Gleich, Jacob A Cram, J L Weissman, David A Caron

ISME Commun· March 2022

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Microbiota of larvae during a hatchery crash and under normal production: Amplicon sequence data.
Jacob A Cram, Matthew W Gray, Katherine McFarland, Ashley Hollins

Data Brief· February 2022

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Human gut microbiota is associated with HIV-reactive immunoglobulin at baseline and following HIV vaccination.
Jacob A Cram, Andrew J Fiore-Gartland, Sujatha Srinivasan, Shelly Karuna, Giuseppe Pantaleo

PLoS One· April 2020

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Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis.
Dongmei Ai, Xiaoxin Li, Hongfei Pan, Jiamin Chen, Jacob A Cram

BMC Genomics· April 2019

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Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling.
David M Needham, Erin B Fichot, Ellice Wang, Lyria Berdjeb, Jacob A Cram

ISME J· October 2018

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Utilizing gnotobiotic models to inform the role of the microbiome in vaccine response heterogeneity.
Jacob A Cram, Kevin W Hager, James G Kublin

Curr Opin HIV AIDS· January 2018

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Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency.
Thomas Weber, Jacob A Cram, Shirley W Leung, Timothy DeVries, Curtis Deutsch

Proc Natl Acad Sci U S A· August 2016

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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision.
Sophie Weiss, Will Van Treuren, Catherine Lozupone, Karoline Faust, Jonathan Friedman, Jacob A Cram

ISME J· July 2016

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Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes.
Jacob A Cram, Li C Xia, David M Needham, Rohan Sachdeva, Fengzhu Sun

ISME J· December 2015

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New insights into relationships between active and dormant organisms, phylogenetic diversity and ecosystem productivity.
Jacob A Cram

Mol Ecol· December 2015

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Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains.
Li C Xia, Dongmei Ai, Jacob A Cram, Xiaoyi Liang, Jed A Fuhrman

BMC Bioinformatics· September 2015

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Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years.
Jacob A Cram, Cheryl-Emiliane T Chow, Rohan Sachdeva, David M Needham, Alma E Parada

ISME J· March 2015

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Marine microbial community dynamics and their ecological interpretation.
Jed A Fuhrman, Jacob A Cram, David M Needham

Nat Rev Microbiol· March 2015

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Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight.
Cheryl-Emiliane T Chow, Rohan Sachdeva, Jacob A Cram, Joshua A Steele, David M Needham

ISME J· December 2013

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Short-term observations of marine bacterial and viral communities: patterns, connections and resilience.
David M Needham, Cheryl-Emiliane T Chow, Jacob A Cram, Rohan Sachdeva, Alma Parada

ISME J· July 2013

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Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.
Li C Xia, Joshua A Steele, Jacob A Cram, Zoe G Cardon, Sheri L Simmons

BMC Syst Biol· November 2012

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Accurate genome relative abundance estimation based on shotgun metagenomic reads.
Li C Xia, Jacob A Cram, Ting Chen, Jed A Fuhrman, Fengzhu Sun

PLoS One· July 2012

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